Analysis of interatomic Contacts of Structural Units in PDB entry:
1LVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LVT entry

There is 1 chain in PDB entry 1LVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1LVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
58 60Right-handed 310
Helix 2
2
A
80 94Right-handed alpha
Helix 3
3
A
99 103Right-handed 310
Helix 4
4
A
114 128Right-handed alpha
Helix 5
5
A
139 147Right-handed alpha
Helix 6
6
A
174 177Right-handed 310
Helix 7
7
A
183 198Right-handed alpha
Helix 8
8
A
204 219Right-handed alpha
Helix 9
9
A
224 234Right-handed alpha
Helix 10
10
A
254 265Right-handed alpha
Helix 11
11
A
266 269Right-handed 310
Helix 12
12
A
275 287Right-handed alpha
Helix 13
13
A
288 298Right-handed alpha
Helix 14
14
A
303 308Right-handed 310
Helix 15
15
A
310 323Right-handed alpha
Helix 16
16
A
339 351Right-handed alpha
Helix 17
17
A
352 358Right-handed 310
Helix 18
18
A
361 368Right-handed alpha
Helix 19
19
A
370 375Right-handed alpha
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There are 5 sheets in PDB entry 1LVT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
10 14anti-parallel
Strand 4
A
105 109parallel
Strand 5
A
133 138parallel
Strand 6
A
359 360anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
67 70anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
299 302parallel
Strand 3
A
152 157parallel
Strand 4
A
162 168anti-parallel
Strand 5
A
171 172anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
299 302parallel
Strand 3
A
152 157parallel
Strand 4
A
162 168anti-parallel
Strand 5
A
178 180anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
249 252anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il