Analysis of interatomic Contacts of Structural Units in PDB entry:
1LX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LX9 entry

There is 1 chain in PDB entry 1LX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1PHE 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 1LX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
47 52Right-handed alpha
Helix 3
3
A
59 73Right-handed alpha
Helix 4
4
A
83 97Right-handed alpha
Helix 5
5
A
106 125Right-handed alpha
Helix 6
6
A
146 153Right-handed alpha
Helix 7
7
A
155 160Right-handed alpha
Helix 8
8
A
176 184Right-handed alpha
Helix 9
9
A
209 222Right-handed alpha
Helix 10
10
A
241 247Right-handed 310
Helix 11
11
A
256 260Right-handed 310
Helix 12
12
A
272 277Right-handed alpha
Helix 13
13
A
291 308Right-handed alpha
Helix 14
14
A
309 327Right-handed alpha
Helix 15
15
A
355 366Right-handed alpha
Helix 16
16
A
387 405Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1LX9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
42 45anti-parallel
Strand 4
A
368 369parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
252 255anti-parallel
Strand 4
A
224 228parallel
Strand 5
A
189 194parallel
Strand 6
A
134 138parallel
Strand 7
A
169 172parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
377 380anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il