Analysis of interatomic Contacts of Structural Units in PDB entry:
1LYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LYC entry

There are 2 chains in PDB entry 1LYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PRO 343
B
 SER 8PRO 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1LYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 23Right-handed 310
Helix 2
2
A
24 35Right-handed alpha
Helix 3
3
A
43 58Right-handed alpha
Helix 4
4
A
61 67Right-handed alpha
Helix 5
5
A
77 82Right-handed alpha
Helix 6
6
A
82 87Right-handed alpha
Helix 7
7
A
88 93Right-handed 310
Helix 8
8
A
95 110Right-handed alpha
Helix 9
9
A
112 127Right-handed alpha
Helix 10
10
A
158 170Right-handed alpha
Helix 11
11
A
172 180Right-handed alpha
Helix 12
12
A
181 185Right-handed 310
Helix 13
13
A
192 196Right-handed 310
Helix 14
14
A
209 216Right-handed alpha
Helix 15
15
A
243 251Right-handed alpha
Helix 16
16
A
254 261Right-handed alpha
Helix 17
17
A
264 281Right-handed alpha
Helix 18
18
A
285 289Right-handed 310
Helix 19
19
A
293 296Right-handed 310
Helix 20
20
A
313 317Right-handed 310
Helix 21
21
B
19 23Right-handed 310
Helix 22
22
B
24 35Right-handed alpha
Helix 23
23
B
43 58Right-handed alpha
Helix 24
24
B
61 67Right-handed alpha
Helix 25
25
B
77 82Right-handed alpha
Helix 26
26
B
82 87Right-handed alpha
Helix 27
27
B
88 93Right-handed 310
Helix 28
28
B
95 110Right-handed alpha
Helix 29
29
B
112 127Right-handed alpha
Helix 30
30
B
158 170Right-handed alpha
Helix 31
31
B
172 180Right-handed alpha
Helix 32
32
B
181 185Right-handed 310
Helix 33
33
B
192 196Right-handed 310
Helix 34
34
B
209 216Right-handed alpha
Helix 35
35
B
243 251Right-handed alpha
Helix 36
36
B
254 261Right-handed alpha
Helix 37
37
B
264 281Right-handed alpha
Helix 38
38
B
285 289Right-handed 310
Helix 39
39
B
293 296Right-handed 310
Helix 40
40
B
313 317Right-handed 310
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There are 10 sheets in PDB entry 1LYC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
16 17anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
290 291anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
198 199anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
241 242anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
330 331parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
16 17anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
290 291anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
198 199anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
241 242anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
330 331parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il