Analysis of interatomic Contacts of Structural Units in PDB entry:
1LYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1LYS entry

There are 2 chains in PDB entry 1LYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LEU 129
B
 LYS 1LEU 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 1LYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
H1A
A
4 15Right-handed alpha
Helix 2
H2A
A
24 36Right-handed alpha
Helix 3
H3A
A
79 83Right-handed 310
Helix 4
H4A
A
88 100Right-handed alpha
Helix 5
H5A
A
108 115Right-handed alpha
Helix 6
H6A
A
120 124Right-handed 310
Helix 7
H1B
B
4 15Right-handed alpha
Helix 8
H2B
B
24 36Right-handed alpha
Helix 9
H3B
B
79 83Right-handed 310
Helix 10
H4B
B
88 100Right-handed alpha
Helix 11
H5B
B
108 115Right-handed alpha
Helix 12
H6B
B
120 124Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1LYS. Click on sheet of interest to get list of strands forming it: S1A, S2A, S1B, S2B,

There are 2 strands in S1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
38 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
57 60anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
38 40anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in S2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
57 60anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il