Analysis of interatomic Contacts of Structural Units in PDB entry:
1M08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M08 entry

There are 2 chains in PDB entry 1M08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 446LYS 576
B
 MET 446LYS 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1M08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
463 468Right-handed 310
Helix 2
2
A
477 485Right-handed alpha
Helix 3
3
A
491 506Right-handed alpha
Helix 4
4
A
506 511Right-handed alpha
Helix 5
5
A
514 523Right-handed alpha
Helix 6
6
A
530 534Right-handed 310
Helix 7
7
A
548 552Right-handed 310
Helix 8
8
A
565 573Right-handed alpha
Helix 9
9
B
463 468Right-handed 310
Helix 10
10
B
477 485Right-handed alpha
Helix 11
11
B
491 506Right-handed alpha
Helix 12
12
B
506 511Right-handed alpha
Helix 13
13
B
514 523Right-handed alpha
Helix 14
14
B
530 534Right-handed 310
Helix 15
15
B
548 552Right-handed 310
Helix 16
16
B
565 573Right-handed alpha
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There are 4 sheets in PDB entry 1M08. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
488 489anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
561 564anti-parallel
Strand 3
A
542 545anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 452first strand
Strand 2
B
488 489anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
561 564anti-parallel
Strand 3
B
542 545anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il