Analysis of interatomic Contacts of Structural Units in PDB entry:
1M09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M09 entry

There is 1 chain in PDB entry 1M09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1M09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 32Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
63 75Right-handed alpha
Helix 5
5
A
87 98Right-handed alpha
Helix 6
6
A
104 113Right-handed alpha
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
137 149Right-handed alpha
Helix 9
9
A
170 172Right-handed 310
Helix 10
10
A
173 184Right-handed alpha
Helix 11
11
A
239 258Right-handed alpha
Helix 12
12
A
284 288Right-handed 310
Helix 13
13
A
289 294Right-handed alpha
Helix 14
14
A
297 308Right-handed alpha
Helix 15
15
A
338 342Right-handed 310
Helix 16
16
A
373 388Right-handed alpha
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There are 5 sheets in PDB entry 1M09. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
37 42parallel
Strand 3
A
14 18parallel
Strand 4
A
78 81parallel
Strand 5
A
100 101parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
152 156anti-parallel
Strand 4
A
166 168anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 217first strand
Strand 2
A
202 211anti-parallel
Strand 3
A
261 270anti-parallel
Strand 4
A
273 280anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 225first strand
Strand 2
A
228 234anti-parallel
Strand 3
A
320 332anti-parallel
Strand 4
A
357 370anti-parallel
Strand 5
A
349 352anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
389 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il