Analysis of interatomic Contacts of Structural Units in PDB entry:
1M0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1M0T entry

There are 2 chains in PDB entry 1M0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5	TYR 491
B	PRO 1005	TYR 1491

There are 37 helices in PDB entry 1M0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	7	25	Right-handed alpha
Helix 2	2	A	33	37	Right-handed 310
Helix 3	3	A	55	80	Right-handed alpha
Helix 4	4	A	100	112	Right-handed alpha
Helix 5	5	A	154	171	Right-handed alpha
Helix 6	6	A	182	186	Right-handed 310
Helix 7	7	A	190	209	Right-handed alpha
Helix 8	8	A	230	246	Right-handed alpha
Helix 9	9	A	253	260	Right-handed alpha
Helix 10	10	A	289	293	Right-handed 310
Helix 11	11	A	295	308	Right-handed alpha
Helix 12	12	A	315	321	Right-handed alpha
Helix 13	13	A	323	330	Right-handed alpha
Helix 14	14	A	332	338	Right-handed alpha
Helix 15	15	A	342	353	Right-handed alpha
Helix 16	16	A	362	375	Right-handed alpha
Helix 17	17	A	396	403	Right-handed alpha
Helix 18	18	A	404	404	Right-handed 310
Helix 19	19	A	405	410	Right-handed 310
Helix 20	20	B	1007	1025	Right-handed alpha
Helix 21	21	B	1033	1037	Right-handed 310
Helix 22	22	B	1055	1080	Right-handed alpha
Helix 23	23	B	1099	1112	Right-handed alpha
Helix 24	24	B	1154	1171	Right-handed alpha
Helix 25	25	B	1182	1186	Right-handed 310
Helix 26	26	B	1190	1209	Right-handed alpha
Helix 27	27	B	1230	1246	Right-handed alpha
Helix 28	28	B	1253	1260	Right-handed alpha
Helix 29	29	B	1289	1293	Right-handed 310
Helix 30	30	B	1295	1308	Right-handed alpha
Helix 31	31	B	1315	1321	Right-handed alpha
Helix 32	32	B	1323	1331	Right-handed alpha
Helix 33	33	B	1332	1337	Right-handed alpha
Helix 34	34	B	1342	1352	Right-handed alpha
Helix 35	35	B	1362	1375	Right-handed alpha
Helix 36	36	B	1396	1403	Right-handed alpha
Helix 37	37	B	1405	1410	Right-handed alpha

There are 13 sheets in PDB entry 1M0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	29	first strand
Strand 2	A	40	43	anti-parallel
Strand 3	B	1040	1043	anti-parallel
Strand 4	B	1028	1029	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	428	430	anti-parallel
Strand 3	A	433	435	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	488	491	parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	148	first strand
Strand 2	A	123	134	anti-parallel
Strand 3	A	440	451	anti-parallel
Strand 4	A	456	469	anti-parallel
Strand 5	A	484	485	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	219	224	parallel
Strand 3	A	278	285	parallel
Strand 4	A	270	272	anti-parallel
Strand 5	A	261	263	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	252	first strand
Strand 2	A	219	224	parallel
Strand 3	A	278	285	parallel
Strand 4	A	311	313	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	412	416	anti-parallel
Strand 3	A	379	383	anti-parallel
Strand 4	A	392	393	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1047	first strand
Strand 2	B	1428	1430	anti-parallel
Strand 3	B	1433	1435	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1051	1054	first strand
Strand 2	B	1488	1491	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1141	1148	first strand
Strand 2	B	1123	1134	anti-parallel
Strand 3	B	1440	1451	anti-parallel
Strand 4	B	1456	1469	anti-parallel
Strand 5	B	1484	1486	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1249	1252	first strand
Strand 2	B	1219	1224	parallel
Strand 3	B	1278	1285	parallel
Strand 4	B	1270	1272	anti-parallel
Strand 5	B	1261	1263	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1249	1252	first strand
Strand 2	B	1219	1224	parallel
Strand 3	B	1278	1285	parallel
Strand 4	B	1311	1313	parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1356	1358	first strand
Strand 2	B	1413	1416	anti-parallel
Strand 3	B	1379	1382	anti-parallel
Strand 4	B	1392	1393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1M0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
1M0T