Analysis of interatomic Contacts of Structural Units in PDB entry:
1M0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M0W entry

There are 2 chains in PDB entry 1M0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6TYR 491
B
 PRO 1005TYR 1491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1M0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 26Right-handed alpha
Helix 2
2
A
33 37Right-handed 310
Helix 3
3
A
55 80Right-handed alpha
Helix 4
4
A
84 97Right-handed alpha
Helix 5
5
A
100 112Right-handed alpha
Helix 6
6
A
154 171Right-handed alpha
Helix 7
7
A
182 186Right-handed 310
Helix 8
8
A
190 209Right-handed alpha
Helix 9
9
A
230 244Right-handed alpha
Helix 10
10
A
253 260Right-handed alpha
Helix 11
11
A
289 293Right-handed 310
Helix 12
12
A
295 308Right-handed alpha
Helix 13
13
A
315 322Right-handed alpha
Helix 14
14
A
323 330Right-handed alpha
Helix 15
15
A
332 337Right-handed alpha
Helix 16
16
A
342 351Right-handed alpha
Helix 17
17
A
362 375Right-handed alpha
Helix 18
18
A
396 403Right-handed alpha
Helix 19
19
A
404 404Right-handed 310
Helix 20
20
A
405 410Right-handed 310
Helix 21
21
B
1007 1026Right-handed alpha
Helix 22
22
B
1033 1037Right-handed 310
Helix 23
23
B
1055 1080Right-handed alpha
Helix 24
24
B
1084 1097Right-handed alpha
Helix 25
25
B
1100 1112Right-handed alpha
Helix 26
26
B
1154 1171Right-handed alpha
Helix 27
27
B
1182 1186Right-handed 310
Helix 28
28
B
1190 1209Right-handed alpha
Helix 29
29
B
1230 1246Right-handed alpha
Helix 30
30
B
1253 1260Right-handed alpha
Helix 31
31
B
1289 1293Right-handed 310
Helix 32
32
B
1295 1308Right-handed alpha
Helix 33
33
B
1315 1322Right-handed alpha
Helix 34
34
B
1323 1330Right-handed alpha
Helix 35
35
B
1332 1337Right-handed alpha
Helix 36
36
B
1342 1352Right-handed alpha
Helix 37
37
B
1362 1375Right-handed alpha
Helix 38
38
B
1396 1403Right-handed alpha
Helix 39
39
B
1404 1404Right-handed 310
Helix 40
40
B
1405 1410Right-handed 310
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There are 15 sheets in PDB entry 1M0W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
40 43anti-parallel
Strand 3
B
1040 1043anti-parallel
Strand 4
B
1028 1029anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
428 430anti-parallel
Strand 3
A
433 435anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
488 491parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 148first strand
Strand 2
A
123 136anti-parallel
Strand 3
A
440 451anti-parallel
Strand 4
A
456 469anti-parallel
Strand 5
A
483 485anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
219 224parallel
Strand 3
A
278 285parallel
Strand 4
A
270 272anti-parallel
Strand 5
A
261 263anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 252first strand
Strand 2
A
219 224parallel
Strand 3
A
278 285parallel
Strand 4
A
311 313parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
412 416anti-parallel
Strand 3
A
379 383anti-parallel
Strand 4
A
392 393anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
477 480anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1046 1047first strand
Strand 2
B
1428 1430anti-parallel
Strand 3
B
1433 1435anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1051 1054first strand
Strand 2
B
1488 1491parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1139 1148first strand
Strand 2
B
1123 1136anti-parallel
Strand 3
B
1440 1451anti-parallel
Strand 4
B
1456 1469anti-parallel
Strand 5
B
1483 1485anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1249 1252first strand
Strand 2
B
1219 1224parallel
Strand 3
B
1278 1285parallel
Strand 4
B
1270 1272anti-parallel
Strand 5
B
1261 1263anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1249 1252first strand
Strand 2
B
1219 1224parallel
Strand 3
B
1278 1285parallel
Strand 4
B
1311 1313parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1356 1357first strand
Strand 2
B
1412 1416anti-parallel
Strand 3
B
1379 1383anti-parallel
Strand 4
B
1392 1393anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1472 1474first strand
Strand 2
B
1477 1480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il