Analysis of interatomic Contacts of Structural Units in PDB entry:
1M13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M13 entry

There is 1 chain in PDB entry 1M13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 142SER 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1M13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
144 162Right-handed alpha
Helix 2
2
A
198 204Right-handed alpha
Helix 3
3
A
205 209Right-handed 310
Helix 4
4
A
233 238Right-handed 310
Helix 5
5
A
239 261Right-handed alpha
Helix 6
6
A
261 266Right-handed alpha
Helix 7
7
A
268 291Right-handed alpha
Helix 8
8
A
313 319Right-handed alpha
Helix 9
9
A
321 333Right-handed alpha
Helix 10
10
A
336 349Right-handed alpha
Helix 11
11
A
358 381Right-handed alpha
Helix 12
12
A
383 387Right-handed 310
Helix 13
13
A
388 418Right-handed alpha
Helix 14
14
A
422 430Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1M13.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
304 308anti-parallel
Strand 4
A
298 301anti-parallel
Strand 5
A
292 293anti-parallel
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