Analysis of interatomic Contacts of Structural Units in PDB entry:
1M15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M15 entry

There is 1 chain in PDB entry 1M15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2ALA 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1M15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 20Right-handed alpha
Helix 2
2
A
25 31Right-handed alpha
Helix 3
3
A
32 40Right-handed alpha
Helix 4
4
A
49 60Right-handed alpha
Helix 5
5
A
73 78Right-handed alpha
Helix 6
6
A
78 90Right-handed alpha
Helix 7
7
A
106 110Right-handed 310
Helix 8
8
A
136 140Right-handed 310
Helix 9
9
A
141 157Right-handed alpha
Helix 10
10
A
158 159Right-handed 310
Helix 11
11
A
160 164Right-handed 310
Helix 12
12
A
174 184Right-handed alpha
Helix 13
13
A
192 198Right-handed alpha
Helix 14
14
A
238 255Right-handed alpha
Helix 15
15
A
271 275Right-handed 310
Helix 16
16
A
287 293Right-handed alpha
Helix 17
17
A
293 304Right-handed alpha
Helix 18
18
A
334 356Right-handed alpha
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There are 2 sheets in PDB entry 1M15. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
209 212anti-parallel
Strand 3
A
218 222anti-parallel
Strand 4
A
228 235anti-parallel
Strand 5
A
120 129anti-parallel
Strand 6
A
280 285anti-parallel
Strand 7
A
323 327anti-parallel
Strand 8
A
306 309anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
266 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il