Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M1A entry

There are 10 chains in PDB entry 1M1A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
 A 1 T 146
J
 A 147 T 292
A
 LYS 437ALA 535
B
 ARG 23GLY 102
C
 ALA 814LYS 918
D
 THR 1229ALA 1321
E
 PRO 638ALA 735
F
 LEU 210GLY 302
G
 ALA 1014LYS 1119
H
 THR 1429ALA 1521
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1M1A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
444 457Right-handed alpha
Helix 2
2
A
463 477Right-handed alpha
Helix 3
3
A
485 514Right-handed alpha
Helix 4
4
A
520 532Right-handed alpha
Helix 5
5
B
25 29Right-handed 310
Helix 6
6
B
30 41Right-handed alpha
Helix 7
7
B
49 76Right-handed alpha
Helix 8
8
B
82 93Right-handed alpha
Helix 9
9
C
826 837Right-handed alpha
Helix 10
10
C
845 873Right-handed alpha
Helix 11
11
C
879 890Right-handed alpha
Helix 12
12
C
890 897Right-handed alpha
Helix 13
13
C
912 916Right-handed 310
Helix 14
14
D
1234 1246Right-handed alpha
Helix 15
15
D
1252 1281Right-handed alpha
Helix 16
16
D
1287 1299Right-handed alpha
Helix 17
17
D
1300 1320Right-handed alpha
Helix 18
18
E
644 656Right-handed alpha
Helix 19
19
E
663 677Right-handed alpha
Helix 20
20
E
685 714Right-handed alpha
Helix 21
21
E
720 731Right-handed alpha
Helix 22
22
F
224 229Right-handed 310
Helix 23
23
F
230 241Right-handed alpha
Helix 24
24
F
249 276Right-handed alpha
Helix 25
25
F
282 293Right-handed alpha
Helix 26
26
G
1016 1021Right-handed alpha
Helix 27
27
G
1026 1037Right-handed alpha
Helix 28
28
G
1045 1072Right-handed alpha
Helix 29
29
G
1079 1089Right-handed alpha
Helix 30
30
G
1090 1097Right-handed alpha
Helix 31
31
G
1112 1116Right-handed 310
Helix 32
32
H
1434 1446Right-handed alpha
Helix 33
33
H
1452 1481Right-handed alpha
Helix 34
34
H
1487 1499Right-handed alpha
Helix 35
35
H
1500 1520Right-handed alpha
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There are 10 sheets in PDB entry 1M1A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
B
80 81parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 519first strand
Strand 2
B
45 46parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
G
1101 1102parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
842 843first strand
Strand 2
D
1285 1286parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
877 878first strand
Strand 2
D
1250 1251parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
900 902first strand
Strand 2
F
296 298parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
683 684first strand
Strand 2
F
280 281parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
718 719first strand
Strand 2
F
245 246parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
1042 1043first strand
Strand 2
H
1485 1486parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
1077 1078first strand
Strand 2
H
1450 1451parallel
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