Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1M1C entry

There are 2 chains in PDB entry 1M1C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 651
B	MET 1	THR 651

There are 39 helices in PDB entry 1M1C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	6	Right-handed alpha
Helix 2	2	A	74	78	Right-handed 310
Helix 3	3	A	85	96	Right-handed alpha
Helix 4	4	A	100	111	Right-handed alpha
Helix 5	5	A	120	139	Right-handed alpha
Helix 6	6	A	207	218	Right-handed alpha
Helix 7	7	A	227	231	Right-handed 310
Helix 8	8	A	251	257	Right-handed alpha
Helix 9	9	A	268	283	Right-handed alpha
Helix 10	10	A	285	299	Right-handed alpha
Helix 11	11	A	308	313	Right-handed 310
Helix 12	12	A	345	357	Right-handed alpha
Helix 13	13	A	358	383	Right-handed alpha
Helix 14	14	A	397	400	Right-handed 310
Helix 15	15	A	401	415	Right-handed alpha
Helix 16	16	A	430	434	Right-handed 310
Helix 17	17	A	506	519	Right-handed alpha
Helix 18	18	A	549	554	Right-handed 310
Helix 19	19	B	1	7	Right-handed alpha
Helix 20	20	B	85	91	Right-handed alpha
Helix 21	21	B	92	96	Right-handed 310
Helix 22	22	B	102	112	Right-handed alpha
Helix 23	23	B	122	139	Right-handed alpha
Helix 24	24	B	207	219	Right-handed alpha
Helix 25	25	B	227	231	Right-handed 310
Helix 26	26	B	249	255	Right-handed alpha
Helix 27	27	B	261	265	Right-handed 310
Helix 28	28	B	268	284	Right-handed alpha
Helix 29	29	B	285	300	Right-handed alpha
Helix 30	30	B	307	311	Right-handed 310
Helix 31	31	B	332	336	Right-handed 310
Helix 32	32	B	345	357	Right-handed alpha
Helix 33	33	B	358	385	Right-handed alpha
Helix 34	34	B	396	400	Right-handed 310
Helix 35	35	B	401	414	Right-handed alpha
Helix 36	36	B	430	434	Right-handed 310
Helix 37	37	B	470	474	Right-handed 310
Helix 38	38	B	506	520	Right-handed alpha
Helix 39	39	B	549	553	Right-handed 310

There are 21 sheets in PDB entry 1M1C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	609	610	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	41	54	anti-parallel
Strand 3	A	26	38	anti-parallel
Strand 4	A	587	600	anti-parallel
Strand 5	A	488	491	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	303	first strand
Strand 2	A	41	54	anti-parallel
Strand 3	A	26	38	anti-parallel
Strand 4	A	587	600	anti-parallel
Strand 5	A	604	606	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	319	323	parallel
Strand 3	A	427	429	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	151	first strand
Strand 2	A	155	157	anti-parallel
Strand 3	A	445	446	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	241	243	parallel
Strand 3	A	200	202	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	623	626	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	638	639	anti-parallel
Strand 3	A	646	647	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	443	first strand
Strand 2	A	458	462	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	496	497	first strand
Strand 2	A	501	505	anti-parallel
Strand 3	A	559	567	anti-parallel
Strand 4	A	521	525	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	609	610	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	588	598	anti-parallel
Strand 3	B	25	38	anti-parallel
Strand 4	B	41	49	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	490	first strand
Strand 2	B	588	598	anti-parallel
Strand 3	B	25	38	anti-parallel
Strand 4	B	52	54	anti-parallel
Strand 5	B	302	303	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	319	322	parallel
Strand 3	B	427	429	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	156	157	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	189	first strand
Strand 2	B	239	243	parallel
Strand 3	B	200	202	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	623	626	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	636	640	anti-parallel
Strand 3	B	645	649	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	461	462	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	559	560	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	524	first strand
Strand 2	B	564	567	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1M1C

Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1C