Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M1D entry

There are 4 chains in PDB entry 1M1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 48ARG 210
B
 GLY 12GLY 13
B
 ALA 15ARG 17
C
 LEU 349ARG 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1M1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 77Right-handed alpha
Helix 2
2
A
81 90Right-handed alpha
Helix 3
3
A
130 133Right-handed 310
Helix 4
4
A
136 152Right-handed alpha
Helix 5
5
A
165 171Right-handed alpha
Helix 6
6
A
181 185Right-handed 310
Helix 7
7
C
359 377Right-handed alpha
Helix 8
8
C
381 390Right-handed alpha
Helix 9
9
C
430 433Right-handed 310
Helix 10
10
C
436 452Right-handed alpha
Helix 11
11
C
465 472Right-handed alpha
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There are 2 sheets in PDB entry 1M1D. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 55first strand
Strand 2
A
94 101anti-parallel
Strand 3
A
105 115anti-parallel
Strand 4
A
120 128anti-parallel
Strand 5
A
156 162parallel
Strand 6
A
195 201anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
350 355first strand
Strand 2
C
394 401anti-parallel
Strand 3
C
405 415anti-parallel
Strand 4
C
420 428anti-parallel
Strand 5
C
456 461parallel
Strand 6
C
496 501anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il