Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M1L entry

There are 4 chains in PDB entry 1M1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27ASP 262
B
 ALA 27ASP 262
C
 LEU 29ASP 262
D
 LEU 29ASP 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1M1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 45Right-handed alpha
Helix 2
2
A
59 63Right-handed 310
Helix 3
3
A
135 152Right-handed alpha
Helix 4
4
A
204 214Right-handed alpha
Helix 5
5
A
215 226Right-handed alpha
Helix 6
6
A
227 230Right-handed 310
Helix 7
7
A
243 248Right-handed alpha
Helix 8
8
A
250 261Right-handed alpha
Helix 9
9
B
31 45Right-handed alpha
Helix 10
10
B
59 63Right-handed 310
Helix 11
11
B
135 152Right-handed alpha
Helix 12
12
B
204 214Right-handed alpha
Helix 13
13
B
215 226Right-handed alpha
Helix 14
14
B
227 230Right-handed 310
Helix 15
15
B
243 248Right-handed alpha
Helix 16
16
B
250 261Right-handed alpha
Helix 17
17
C
31 45Right-handed alpha
Helix 18
18
C
59 63Right-handed 310
Helix 19
19
C
135 151Right-handed alpha
Helix 20
20
C
204 214Right-handed alpha
Helix 21
21
C
215 226Right-handed alpha
Helix 22
22
C
227 230Right-handed 310
Helix 23
23
C
243 248Right-handed alpha
Helix 24
24
C
250 261Right-handed alpha
Helix 25
25
D
31 45Right-handed alpha
Helix 26
26
D
59 63Right-handed 310
Helix 27
27
D
135 150Right-handed alpha
Helix 28
28
D
204 214Right-handed alpha
Helix 29
29
D
215 226Right-handed alpha
Helix 30
30
D
227 230Right-handed 310
Helix 31
31
D
243 248Right-handed alpha
Helix 32
32
D
250 261Right-handed alpha
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There are 4 sheets in PDB entry 1M1L. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
193 203anti-parallel
Strand 4
A
113 125parallel
Strand 5
A
87 93anti-parallel
Strand 6
A
70 76anti-parallel
Strand 7
A
52 55anti-parallel
Strand 8
D
52 55anti-parallel
Strand 9
D
70 76anti-parallel
Strand 10
D
87 93anti-parallel
Strand 11
D
113 125anti-parallel
Strand 12
D
193 203parallel
Strand 13
D
176 181anti-parallel
Strand 14
D
160 161anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
193 203anti-parallel
Strand 3
A
113 125parallel
Strand 4
A
87 93anti-parallel
Strand 5
A
70 76anti-parallel
Strand 6
A
52 55anti-parallel
Strand 7
D
52 55anti-parallel
Strand 8
D
70 76anti-parallel
Strand 9
D
87 93anti-parallel
Strand 10
D
113 125anti-parallel
Strand 11
D
193 203parallel
Strand 12
D
188 190anti-parallel
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There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
176 181anti-parallel
Strand 3
B
193 203anti-parallel
Strand 4
B
113 125parallel
Strand 5
B
87 93anti-parallel
Strand 6
B
70 76anti-parallel
Strand 7
B
52 55anti-parallel
Strand 8
C
52 55anti-parallel
Strand 9
C
70 76anti-parallel
Strand 10
C
87 93anti-parallel
Strand 11
C
113 125anti-parallel
Strand 12
C
193 203parallel
Strand 13
C
176 181anti-parallel
Strand 14
C
160 161anti-parallel
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There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
193 203anti-parallel
Strand 3
B
113 125parallel
Strand 4
B
87 93anti-parallel
Strand 5
B
70 76anti-parallel
Strand 6
B
52 55anti-parallel
Strand 7
C
52 55anti-parallel
Strand 8
C
70 76anti-parallel
Strand 9
C
87 93anti-parallel
Strand 10
C
113 125anti-parallel
Strand 11
C
193 203parallel
Strand 12
C
188 190anti-parallel
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