Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M1M entry

There are 2 chains in PDB entry 1M1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2MET 333
B
 ILE 5MET 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1M1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 34Right-handed alpha
Helix 2
2
A
40 49Right-handed alpha
Helix 3
3
A
61 77Right-handed alpha
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
101 108Right-handed alpha
Helix 6
6
A
121 123Right-handed 310
Helix 7
7
A
124 139Right-handed alpha
Helix 8
8
A
153 157Right-handed 310
Helix 9
9
A
194 197Right-handed 310
Helix 10
10
A
205 211Right-handed alpha
Helix 11
11
A
223 247Right-handed alpha
Helix 12
12
A
249 253Right-handed 310
Helix 13
13
A
262 274Right-handed alpha
Helix 14
14
A
283 288Right-handed 310
Helix 15
15
A
291 293Right-handed 310
Helix 16
16
A
294 306Right-handed alpha
Helix 17
17
B
30 34Right-handed alpha
Helix 18
18
B
40 49Right-handed alpha
Helix 19
19
B
61 77Right-handed alpha
Helix 20
20
B
80 84Right-handed 310
Helix 21
21
B
100 110Right-handed alpha
Helix 22
22
B
124 139Right-handed alpha
Helix 23
23
B
153 157Right-handed 310
Helix 24
24
B
194 197Right-handed 310
Helix 25
25
B
205 211Right-handed alpha
Helix 26
26
B
223 247Right-handed alpha
Helix 27
27
B
262 274Right-handed alpha
Helix 28
28
B
283 288Right-handed 310
Helix 29
29
B
291 293Right-handed 310
Helix 30
30
B
294 306Right-handed alpha
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There are 7 sheets in PDB entry 1M1M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 22first strand
Strand 2
A
171 179anti-parallel
Strand 3
A
144 151anti-parallel
Strand 4
A
86 90parallel
Strand 5
A
115 120parallel
Strand 6
B
115 120anti-parallel
Strand 7
B
86 90parallel
Strand 8
B
145 151parallel
Strand 9
B
171 179anti-parallel
Strand 10
B
14 22anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
52 55anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 192first strand
Strand 2
A
325 332anti-parallel
Strand 3
A
314 321anti-parallel
Strand 4
A
255 258parallel
Strand 5
A
280 281parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
220 222anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
52 55anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 192first strand
Strand 2
B
325 332anti-parallel
Strand 3
B
314 321anti-parallel
Strand 4
B
255 258parallel
Strand 5
B
280 281parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 202first strand
Strand 2
B
220 222anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il