Analysis of interatomic Contacts of Structural Units in PDB entry:
1M1Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M1Z entry

There are 2 chains in PDB entry 1M1Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASP 506
B
 GLY 2THR 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 1M1Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
41 45Right-handed 310
Helix 2
2
A
57 60Right-handed 310
Helix 3
3
A
81 87Right-handed alpha
Helix 4
4
A
97 110Right-handed alpha
Helix 5
5
A
111 116Right-handed 310
Helix 6
6
A
158 163Right-handed alpha
Helix 7
7
A
218 238Right-handed alpha
Helix 8
8
A
251 266Right-handed alpha
Helix 9
9
A
280 292Right-handed alpha
Helix 10
10
A
301 307Right-handed alpha
Helix 11
11
A
308 317Right-handed alpha
Helix 12
12
A
320 337Right-handed alpha
Helix 13
13
A
350 355Right-handed alpha
Helix 14
14
A
362 375Right-handed alpha
Helix 15
15
A
385 390Right-handed alpha
Helix 16
16
A
397 400Right-handed 310
Helix 17
17
A
401 411Right-handed alpha
Helix 18
18
A
412 416Right-handed 310
Helix 19
19
A
423 431Right-handed alpha
Helix 20
20
A
432 434Right-handed 310
Helix 21
21
A
435 441Right-handed alpha
Helix 22
22
A
454 462Right-handed alpha
Helix 23
23
A
473 486Right-handed alpha
Helix 24
24
A
491 495Right-handed 310
Helix 25
25
A
496 504Right-handed alpha
Helix 26
26
B
41 45Right-handed 310
Helix 27
27
B
58 60Right-handed 310
Helix 28
28
B
81 87Right-handed alpha
Helix 29
29
B
97 110Right-handed alpha
Helix 30
30
B
111 116Right-handed 310
Helix 31
31
B
157 163Right-handed alpha
Helix 32
32
B
218 237Right-handed alpha
Helix 33
33
B
251 266Right-handed alpha
Helix 34
34
B
280 292Right-handed alpha
Helix 35
35
B
301 307Right-handed alpha
Helix 36
36
B
308 317Right-handed alpha
Helix 37
37
B
320 337Right-handed alpha
Helix 38
38
B
350 355Right-handed alpha
Helix 39
39
B
363 375Right-handed alpha
Helix 40
40
B
385 390Right-handed alpha
Helix 41
41
B
397 400Right-handed 310
Helix 42
42
B
401 411Right-handed alpha
Helix 43
43
B
412 417Right-handed alpha
Helix 44
44
B
423 430Right-handed alpha
Helix 45
45
B
435 440Right-handed alpha
Helix 46
46
B
454 462Right-handed alpha
Helix 47
47
B
469 486Right-handed alpha
Helix 48
48
B
491 495Right-handed 310
Helix 49
49
B
496 507Right-handed alpha
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There are 6 sheets in PDB entry 1M1Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
11 17anti-parallel
Strand 4
A
151 155anti-parallel
Strand 5
A
144 148anti-parallel
Strand 6
A
185 186anti-parallel
Strand 7
A
176 177anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 65first strand
Strand 2
A
71 79anti-parallel
Strand 3
A
119 127anti-parallel
Strand 4
A
130 135anti-parallel
Strand 5
A
191 196anti-parallel
Strand 6
A
201 206anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 300first strand
Strand 2
A
269 275parallel
Strand 3
A
245 247parallel
Strand 4
A
343 345parallel
Strand 5
A
394 396parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
11 16anti-parallel
Strand 4
B
151 155anti-parallel
Strand 5
B
144 148anti-parallel
Strand 6
B
185 186anti-parallel
Strand 7
B
176 177anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
71 79anti-parallel
Strand 3
B
119 127anti-parallel
Strand 4
B
130 135anti-parallel
Strand 5
B
191 196anti-parallel
Strand 6
B
201 206anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 300first strand
Strand 2
B
269 275parallel
Strand 3
B
245 247parallel
Strand 4
B
343 345parallel
Strand 5
B
394 396parallel
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