Analysis of interatomic Contacts of Structural Units in PDB entry:
1M2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M2J entry

There is 1 chain in PDB entry 1M2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 1M2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
21 28Right-handed 310
Helix 3
3
A
37 42Right-handed alpha
Helix 4
4
A
43 48Right-handed alpha
Helix 5
5
A
49 56Right-handed alpha
Helix 6
6
A
56 74Right-handed alpha
Helix 7
7
A
77 89Right-handed alpha
Helix 8
8
A
102 107Right-handed alpha
Helix 9
9
A
164 178Right-handed alpha
Helix 10
10
A
192 194Right-handed 310
Helix 11
11
A
195 203Right-handed alpha
Helix 12
12
A
217 221Right-handed 310
Helix 13
13
A
228 246Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1M2J. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
92 97parallel
Strand 3
A
15 19parallel
Strand 4
A
180 184parallel
Strand 5
A
206 210parallel
Strand 6
A
223 225parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
117 124anti-parallel
Strand 3
A
152 156anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il