Analysis of interatomic Contacts of Structural Units in PDB entry:
1M2W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M2W entry

There are 2 chains in PDB entry 1M2W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1PRO 492
B
 MSE 1PRO 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 1M2W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 11Right-handed 310
Helix 2
2
A
21 25Right-handed 310
Helix 3
3
A
35 41Right-handed alpha
Helix 4
4
A
41 52Right-handed alpha
Helix 5
5
A
66 68Right-handed 310
Helix 6
6
A
69 78Right-handed alpha
Helix 7
7
A
111 120Right-handed alpha
Helix 8
8
A
149 158Right-handed alpha
Helix 9
9
A
164 179Right-handed alpha
Helix 10
10
A
194 209Right-handed alpha
Helix 11
11
A
211 222Right-handed alpha
Helix 12
12
A
237 249Right-handed alpha
Helix 13
13
A
276 281Right-handed 310
Helix 14
14
A
288 314Right-handed alpha
Helix 15
15
A
317 323Right-handed alpha
Helix 16
16
A
324 338Right-handed alpha
Helix 17
17
A
339 343Right-handed 310
Helix 18
18
A
350 363Right-handed alpha
Helix 19
19
A
370 376Right-handed alpha
Helix 20
20
A
377 386Right-handed alpha
Helix 21
21
A
386 397Right-handed alpha
Helix 22
22
A
400 414Right-handed alpha
Helix 23
23
A
430 438Right-handed alpha
Helix 24
24
A
443 449Right-handed alpha
Helix 25
25
A
451 456Right-handed alpha
Helix 26
26
A
462 490Right-handed alpha
Helix 27
27
B
7 11Right-handed 310
Helix 28
28
B
21 25Right-handed 310
Helix 29
29
B
35 41Right-handed alpha
Helix 30
30
B
41 51Right-handed alpha
Helix 31
31
B
68 78Right-handed alpha
Helix 32
32
B
111 120Right-handed alpha
Helix 33
33
B
149 158Right-handed alpha
Helix 34
34
B
164 179Right-handed alpha
Helix 35
35
B
194 211Right-handed alpha
Helix 36
36
B
211 222Right-handed alpha
Helix 37
37
B
237 249Right-handed alpha
Helix 38
38
B
276 281Right-handed 310
Helix 39
39
B
288 314Right-handed alpha
Helix 40
40
B
317 322Right-handed alpha
Helix 41
41
B
324 338Right-handed alpha
Helix 42
42
B
339 343Right-handed 310
Helix 43
43
B
350 363Right-handed alpha
Helix 44
44
B
370 376Right-handed alpha
Helix 45
45
B
377 386Right-handed alpha
Helix 46
46
B
386 397Right-handed alpha
Helix 47
47
B
400 414Right-handed alpha
Helix 48
48
B
430 438Right-handed alpha
Helix 49
49
B
439 439Right-handed 310
Helix 50
50
B
440 442Right-handed 310
Helix 51
51
B
443 449Right-handed alpha
Helix 52
52
B
451 456Right-handed alpha
Helix 53
53
B
462 480Right-handed alpha
Helix 54
54
B
480 489Right-handed alpha
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There are 6 sheets in PDB entry 1M2W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
59 64parallel
Strand 3
A
27 32parallel
Strand 4
A
126 129parallel
Strand 5
A
185 188parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
83 87anti-parallel
Strand 3
A
256 258parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
263 267anti-parallel
Strand 3
A
283 285parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 107first strand
Strand 2
B
59 64parallel
Strand 3
B
27 32parallel
Strand 4
B
126 129parallel
Strand 5
B
185 188parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
83 87anti-parallel
Strand 3
B
256 258parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
263 266anti-parallel
Strand 3
B
283 284parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il