Analysis of interatomic Contacts of Structural Units in PDB entry:
1M32

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1M32 entry

There are 6 chains in PDB entry 1M32 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 5	THR 365
B	ASN 4	THR 365
C	TYR 5	THR 365
D	ASN 4	THR 365
E	TYR 5	THR 365
F	ASN 4	THR 365

There are 84 helices in PDB entry 1M32. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	16	22	Right-handed alpha
Helix 2	2	A	31	36	Right-handed alpha
Helix 3	3	A	38	51	Right-handed alpha
Helix 4	4	A	64	76	Right-handed alpha
Helix 5	5	A	89	103	Right-handed alpha
Helix 6	6	A	118	129	Right-handed alpha
Helix 7	7	A	149	161	Right-handed alpha
Helix 8	8	A	208	212	Right-handed alpha
Helix 9	9	A	224	235	Right-handed alpha
Helix 10	10	A	244	262	Right-handed alpha
Helix 11	11	A	262	285	Right-handed alpha
Helix 12	12	A	292	296	Right-handed 310
Helix 13	13	A	312	323	Right-handed alpha
Helix 14	14	A	347	362	Right-handed alpha
Helix 15	15	B	16	22	Right-handed alpha
Helix 16	16	B	31	36	Right-handed alpha
Helix 17	17	B	38	51	Right-handed alpha
Helix 18	18	B	64	76	Right-handed alpha
Helix 19	19	B	89	102	Right-handed alpha
Helix 20	20	B	118	129	Right-handed alpha
Helix 21	21	B	149	160	Right-handed alpha
Helix 22	22	B	208	212	Right-handed alpha
Helix 23	23	B	224	235	Right-handed alpha
Helix 24	24	B	244	262	Right-handed alpha
Helix 25	25	B	262	285	Right-handed alpha
Helix 26	26	B	292	296	Right-handed 310
Helix 27	27	B	312	323	Right-handed alpha
Helix 28	28	B	347	362	Right-handed alpha
Helix 29	29	C	16	22	Right-handed alpha
Helix 30	30	C	31	36	Right-handed alpha
Helix 31	31	C	38	51	Right-handed alpha
Helix 32	32	C	64	76	Right-handed alpha
Helix 33	33	C	89	103	Right-handed alpha
Helix 34	34	C	118	129	Right-handed alpha
Helix 35	35	C	149	160	Right-handed alpha
Helix 36	36	C	208	212	Right-handed alpha
Helix 37	37	C	224	235	Right-handed alpha
Helix 38	38	C	244	262	Right-handed alpha
Helix 39	39	C	262	285	Right-handed alpha
Helix 40	40	C	292	296	Right-handed 310
Helix 41	41	C	312	322	Right-handed alpha
Helix 42	42	C	347	362	Right-handed alpha
Helix 43	43	D	16	22	Right-handed alpha
Helix 44	44	D	31	36	Right-handed alpha
Helix 45	45	D	38	51	Right-handed alpha
Helix 46	46	D	64	76	Right-handed alpha
Helix 47	47	D	89	103	Right-handed alpha
Helix 48	48	D	118	129	Right-handed alpha
Helix 49	49	D	149	160	Right-handed alpha
Helix 50	50	D	208	212	Right-handed alpha
Helix 51	51	D	224	235	Right-handed alpha
Helix 52	52	D	244	262	Right-handed alpha
Helix 53	53	D	262	285	Right-handed alpha
Helix 54	54	D	292	296	Right-handed 310
Helix 55	55	D	312	322	Right-handed alpha
Helix 56	56	D	347	362	Right-handed alpha
Helix 57	57	E	16	22	Right-handed alpha
Helix 58	58	E	31	36	Right-handed alpha
Helix 59	59	E	38	51	Right-handed alpha
Helix 60	60	E	64	76	Right-handed alpha
Helix 61	61	E	89	103	Right-handed alpha
Helix 62	62	E	118	129	Right-handed alpha
Helix 63	63	E	149	160	Right-handed alpha
Helix 64	64	E	208	212	Right-handed alpha
Helix 65	65	E	224	235	Right-handed alpha
Helix 66	66	E	244	262	Right-handed alpha
Helix 67	67	E	262	285	Right-handed alpha
Helix 68	68	E	292	296	Right-handed 310
Helix 69	69	E	312	323	Right-handed alpha
Helix 70	70	E	347	362	Right-handed alpha
Helix 71	71	F	16	22	Right-handed alpha
Helix 72	72	F	31	36	Right-handed alpha
Helix 73	73	F	38	51	Right-handed alpha
Helix 74	74	F	64	76	Right-handed alpha
Helix 75	75	F	89	103	Right-handed alpha
Helix 76	76	F	118	129	Right-handed alpha
Helix 77	77	F	149	160	Right-handed alpha
Helix 78	78	F	208	212	Right-handed alpha
Helix 79	79	F	224	235	Right-handed alpha
Helix 80	80	F	244	262	Right-handed alpha
Helix 81	81	F	262	285	Right-handed alpha
Helix 82	82	F	292	296	Right-handed 310
Helix 83	83	F	312	322	Right-handed alpha
Helix 84	84	F	347	362	Right-handed alpha

There are 18 sheets in PDB entry 1M32. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	325	326	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	62	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	186	190	anti-parallel
Strand 4	A	163	167	parallel
Strand 5	A	134	138	parallel
Strand 6	A	83	87	parallel
Strand 7	A	106	110	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	304	first strand
Strand 2	A	337	341	anti-parallel
Strand 3	A	328	329	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	325	326	parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	62	first strand
Strand 2	B	201	207	anti-parallel
Strand 3	B	186	190	anti-parallel
Strand 4	B	163	167	parallel
Strand 5	B	134	138	parallel
Strand 6	B	83	87	parallel
Strand 7	B	106	110	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	304	first strand
Strand 2	B	337	341	anti-parallel
Strand 3	B	328	329	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	325	326	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	62	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	186	190	anti-parallel
Strand 4	C	163	167	parallel
Strand 5	C	134	138	parallel
Strand 6	C	83	87	parallel
Strand 7	C	106	110	parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	304	first strand
Strand 2	C	337	341	anti-parallel
Strand 3	C	328	329	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	325	326	parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	62	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	186	190	anti-parallel
Strand 4	D	163	167	parallel
Strand 5	D	134	138	parallel
Strand 6	D	83	87	parallel
Strand 7	D	106	110	parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	304	first strand
Strand 2	D	337	341	anti-parallel
Strand 3	D	328	329	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	7	first strand
Strand 2	E	325	326	parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	62	first strand
Strand 2	E	201	207	anti-parallel
Strand 3	E	186	190	anti-parallel
Strand 4	E	163	167	parallel
Strand 5	E	134	138	parallel
Strand 6	E	83	87	parallel
Strand 7	E	106	110	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	304	first strand
Strand 2	E	337	341	anti-parallel
Strand 3	E	328	329	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	325	326	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	62	first strand
Strand 2	F	201	207	anti-parallel
Strand 3	F	186	190	anti-parallel
Strand 4	F	163	167	parallel
Strand 5	F	134	138	parallel
Strand 6	F	83	87	parallel
Strand 7	F	106	110	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	304	first strand
Strand 2	F	337	341	anti-parallel
Strand 3	F	328	329	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1M32

Analysis of interatomic Contacts of Structural Units in PDB entry:
1M32