Analysis of interatomic Contacts of Structural Units in PDB entry:
1M35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1M35 entry

There are 6 chains in PDB entry 1M35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	GLN 440
B	SER 1	GLN 440
C	SER 1	GLN 440
D	SER 1	GLN 440
E	SER 1	GLN 440
F	SER 1	GLN 440

There are101 helices in PDB entry 1M35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	19	Right-handed alpha
Helix 2	2	A	46	54	Right-handed alpha
Helix 3	3	A	84	90	Right-handed alpha
Helix 4	4	A	93	103	Right-handed alpha
Helix 5	5	A	112	122	Right-handed alpha
Helix 6	6	A	134	150	Right-handed alpha
Helix 7	7	A	151	155	Right-handed 310
Helix 8	8	A	165	174	Right-handed alpha
Helix 9	9	A	177	202	Right-handed alpha
Helix 10	10	A	207	222	Right-handed alpha
Helix 11	11	A	237	241	Right-handed 310
Helix 12	12	A	283	304	Right-handed alpha
Helix 13	13	A	309	328	Right-handed alpha
Helix 14	14	A	334	341	Right-handed alpha
Helix 15	15	A	367	371	Right-handed 310
Helix 16	16	A	395	399	Right-handed 310
Helix 17	17	A	426	439	Right-handed alpha
Helix 18	18	B	4	19	Right-handed alpha
Helix 19	19	B	46	54	Right-handed alpha
Helix 20	20	B	93	103	Right-handed alpha
Helix 21	21	B	112	122	Right-handed alpha
Helix 22	22	B	134	150	Right-handed alpha
Helix 23	23	B	151	155	Right-handed 310
Helix 24	24	B	165	174	Right-handed alpha
Helix 25	25	B	177	202	Right-handed alpha
Helix 26	26	B	207	222	Right-handed alpha
Helix 27	27	B	237	241	Right-handed 310
Helix 28	28	B	283	304	Right-handed alpha
Helix 29	29	B	309	328	Right-handed alpha
Helix 30	30	B	334	341	Right-handed alpha
Helix 31	31	B	367	371	Right-handed 310
Helix 32	32	B	395	399	Right-handed 310
Helix 33	33	B	426	439	Right-handed alpha
Helix 34	34	C	4	19	Right-handed alpha
Helix 35	35	C	46	54	Right-handed alpha
Helix 36	36	C	82	90	Right-handed alpha
Helix 37	37	C	93	103	Right-handed alpha
Helix 38	38	C	112	122	Right-handed alpha
Helix 39	39	C	134	150	Right-handed alpha
Helix 40	40	C	151	155	Right-handed 310
Helix 41	41	C	165	174	Right-handed alpha
Helix 42	42	C	177	202	Right-handed alpha
Helix 43	43	C	207	222	Right-handed alpha
Helix 44	44	C	237	241	Right-handed 310
Helix 45	45	C	283	304	Right-handed alpha
Helix 46	46	C	309	328	Right-handed alpha
Helix 47	47	C	334	341	Right-handed alpha
Helix 48	48	C	367	371	Right-handed 310
Helix 49	49	C	395	399	Right-handed 310
Helix 50	50	C	426	436	Right-handed alpha
Helix 51	51	D	4	19	Right-handed alpha
Helix 52	52	D	46	54	Right-handed alpha
Helix 53	53	D	85	90	Right-handed alpha
Helix 54	54	D	93	103	Right-handed alpha
Helix 55	55	D	112	122	Right-handed alpha
Helix 56	56	D	134	150	Right-handed alpha
Helix 57	57	D	151	155	Right-handed 310
Helix 58	58	D	165	174	Right-handed alpha
Helix 59	59	D	177	202	Right-handed alpha
Helix 60	60	D	207	222	Right-handed alpha
Helix 61	61	D	237	241	Right-handed 310
Helix 62	62	D	283	304	Right-handed alpha
Helix 63	63	D	309	328	Right-handed alpha
Helix 64	64	D	334	341	Right-handed alpha
Helix 65	65	D	367	371	Right-handed 310
Helix 66	66	D	395	399	Right-handed 310
Helix 67	67	D	426	438	Right-handed alpha
Helix 68	68	E	4	19	Right-handed alpha
Helix 69	69	E	46	54	Right-handed alpha
Helix 70	70	E	82	86	Right-handed 310
Helix 71	71	E	93	103	Right-handed alpha
Helix 72	72	E	112	122	Right-handed alpha
Helix 73	73	E	134	150	Right-handed alpha
Helix 74	74	E	151	155	Right-handed 310
Helix 75	75	E	165	174	Right-handed alpha
Helix 76	76	E	177	202	Right-handed alpha
Helix 77	77	E	207	222	Right-handed alpha
Helix 78	78	E	237	241	Right-handed 310
Helix 79	79	E	283	304	Right-handed alpha
Helix 80	80	E	309	328	Right-handed alpha
Helix 81	81	E	334	341	Right-handed alpha
Helix 82	82	E	367	371	Right-handed 310
Helix 83	83	E	395	399	Right-handed 310
Helix 84	84	E	426	438	Right-handed alpha
Helix 85	85	F	4	19	Right-handed alpha
Helix 86	86	F	46	54	Right-handed alpha
Helix 87	87	F	85	90	Right-handed alpha
Helix 88	88	F	93	103	Right-handed alpha
Helix 89	89	F	112	122	Right-handed alpha
Helix 90	90	F	134	150	Right-handed alpha
Helix 91	91	F	151	155	Right-handed 310
Helix 92	92	F	165	174	Right-handed alpha
Helix 93	93	F	177	202	Right-handed alpha
Helix 94	94	F	207	222	Right-handed alpha
Helix 95	95	F	237	241	Right-handed 310
Helix 96	96	F	283	304	Right-handed alpha
Helix 97	97	F	309	328	Right-handed alpha
Helix 98	98	F	334	341	Right-handed alpha
Helix 99	99	F	367	371	Right-handed 310
Helix 100	100	F	395	399	Right-handed 310
Helix 101	101	F	426	438	Right-handed alpha

There are 33 sheets in PDB entry 1M35. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	71	78	parallel
Strand 3	A	61	68	anti-parallel
Strand 4	A	23	28	anti-parallel
Strand 5	A	126	129	parallel
Strand 6	A	161	163	parallel
Strand 7	B	161	163	anti-parallel
Strand 8	B	126	129	parallel
Strand 9	B	23	28	parallel
Strand 10	B	61	66	anti-parallel
Strand 11	B	72	78	anti-parallel
Strand 12	B	106	109	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	39	40	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	265	anti-parallel
Strand 3	A	268	269	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	235	first strand
Strand 2	A	256	261	anti-parallel
Strand 3	A	272	277	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	382	first strand
Strand 2	A	407	411	anti-parallel
Strand 3	A	416	418	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	388	first strand
Strand 2	A	401	404	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	39	40	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	263	265	anti-parallel
Strand 3	B	268	269	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	235	first strand
Strand 2	B	256	261	anti-parallel
Strand 3	B	272	277	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	382	first strand
Strand 2	B	407	411	anti-parallel
Strand 3	B	416	418	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	388	first strand
Strand 2	B	401	404	anti-parallel

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There are 12 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	72	78	parallel
Strand 3	C	61	66	anti-parallel
Strand 4	C	23	28	anti-parallel
Strand 5	C	126	129	parallel
Strand 6	C	161	163	parallel
Strand 7	D	161	163	anti-parallel
Strand 8	D	126	129	parallel
Strand 9	D	23	28	parallel
Strand 10	D	61	66	anti-parallel
Strand 11	D	72	78	anti-parallel
Strand 12	D	106	109	parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	39	40	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	263	265	anti-parallel
Strand 3	C	268	269	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	235	first strand
Strand 2	C	256	261	anti-parallel
Strand 3	C	272	277	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	382	first strand
Strand 2	C	407	411	anti-parallel
Strand 3	C	416	418	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	385	388	first strand
Strand 2	C	401	404	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	39	40	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	263	265	anti-parallel
Strand 3	D	268	269	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	235	first strand
Strand 2	D	256	261	anti-parallel
Strand 3	D	272	277	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	382	first strand
Strand 2	D	407	411	anti-parallel
Strand 3	D	416	418	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	385	388	first strand
Strand 2	D	401	404	anti-parallel

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There are 12 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	106	109	first strand
Strand 2	E	72	78	parallel
Strand 3	E	61	66	anti-parallel
Strand 4	E	23	28	anti-parallel
Strand 5	E	126	129	parallel
Strand 6	E	161	163	parallel
Strand 7	F	161	163	anti-parallel
Strand 8	F	126	129	parallel
Strand 9	F	23	28	parallel
Strand 10	F	61	66	anti-parallel
Strand 11	F	72	78	anti-parallel
Strand 12	F	106	109	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	36	first strand
Strand 2	E	39	40	anti-parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	227	first strand
Strand 2	E	263	265	anti-parallel
Strand 3	E	268	269	anti-parallel

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There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	235	first strand
Strand 2	E	256	261	anti-parallel
Strand 3	E	272	277	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	382	first strand
Strand 2	E	407	411	anti-parallel
Strand 3	E	416	418	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	385	388	first strand
Strand 2	E	401	404	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	36	first strand
Strand 2	F	39	40	anti-parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	263	265	anti-parallel
Strand 3	F	268	269	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	232	235	first strand
Strand 2	F	256	261	anti-parallel
Strand 3	F	272	277	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	379	382	first strand
Strand 2	F	407	411	anti-parallel
Strand 3	F	416	418	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	385	388	first strand
Strand 2	F	401	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1M35

Analysis of interatomic Contacts of Structural Units in PDB entry:
1M35