Analysis of interatomic Contacts of Structural Units in PDB entry:
1M38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M38 entry

There are 2 chains in PDB entry 1M38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1ILE 282
B
 THR 1ILE 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1M38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
38 40Right-handed 310
Helix 2
2
A
164 168Right-handed 310
Helix 3
3
A
170 178Right-handed alpha
Helix 4
4
A
180 192Right-handed alpha
Helix 5
5
A
193 197Right-handed 310
Helix 6
6
A
205 207Right-handed 310
Helix 7
7
A
211 231Right-handed alpha
Helix 8
8
A
254 258Right-handed 310
Helix 9
9
A
273 277Right-handed 310
Helix 10
10
B
164 168Right-handed 310
Helix 11
11
B
170 178Right-handed alpha
Helix 12
12
B
180 192Right-handed alpha
Helix 13
13
B
193 197Right-handed 310
Helix 14
14
B
205 208Right-handed 310
Helix 15
15
B
212 231Right-handed alpha
Helix 16
16
B
254 261Right-handed alpha
Helix 17
17
B
273 277Right-handed 310
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There are 12 sheets in PDB entry 1M38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
2 9parallel
Strand 3
A
16 21anti-parallel
Strand 4
A
24 26anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
92 95anti-parallel
Strand 4
A
120 123anti-parallel
Strand 5
A
154 159parallel
Strand 6
A
134 143anti-parallel
Strand 7
A
209 210anti-parallel
Strand 8
A
134 143anti-parallel
Strand 9
A
42 49anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
68 70anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
112 113anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
279 280parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
145 147anti-parallel
Strand 3
A
150 151anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 267first strand
Strand 2
B
2 9parallel
Strand 3
B
16 21anti-parallel
Strand 4
B
24 26anti-parallel
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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
92 95anti-parallel
Strand 4
B
120 123anti-parallel
Strand 5
B
150 159parallel
Strand 6
B
134 147anti-parallel
Strand 7
B
210 211anti-parallel
Strand 8
B
134 147anti-parallel
Strand 9
B
202 203anti-parallel
Strand 10
B
134 147anti-parallel
Strand 11
B
42 49anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
279 280parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
68 70anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
76 77anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il