Analysis of interatomic Contacts of Structural Units in PDB entry:
1M3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M3J entry

There are 2 chains in PDB entry 1M3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 30ASN 500
B
 ASP 30ASN 500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1M3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 44Right-handed alpha
Helix 2
2
A
48 53Right-handed alpha
Helix 3
3
A
111 116Right-handed alpha
Helix 4
4
A
150 169Right-handed alpha
Helix 5
5
A
188 196Right-handed alpha
Helix 6
6
A
199 207Right-handed alpha
Helix 7
7
A
210 215Right-handed alpha
Helix 8
8
A
240 244Right-handed 310
Helix 9
9
A
250 258Right-handed alpha
Helix 10
10
A
289 299Right-handed alpha
Helix 11
11
A
301 305Right-handed 310
Helix 12
12
A
306 315Right-handed alpha
Helix 13
13
A
338 347Right-handed alpha
Helix 14
14
A
463 467Right-handed 310
Helix 15
15
B
37 44Right-handed alpha
Helix 16
16
B
48 53Right-handed alpha
Helix 17
17
B
111 116Right-handed alpha
Helix 18
18
B
150 169Right-handed alpha
Helix 19
19
B
188 196Right-handed alpha
Helix 20
20
B
199 207Right-handed alpha
Helix 21
21
B
210 215Right-handed alpha
Helix 22
22
B
240 244Right-handed 310
Helix 23
23
B
250 258Right-handed alpha
Helix 24
24
B
289 300Right-handed alpha
Helix 25
25
B
301 305Right-handed 310
Helix 26
26
B
306 315Right-handed alpha
Helix 27
27
B
338 347Right-handed alpha
Helix 28
28
B
463 467Right-handed 310
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There are 13 sheets in PDB entry 1M3J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
376 390parallel
Strand 3
A
74 87anti-parallel
Strand 4
A
66 70anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
359 366anti-parallel
Strand 3
A
265 283anti-parallel
Strand 4
A
316 323anti-parallel
Strand 5
A
333 335anti-parallel
Strand 6
A
316 323anti-parallel
Strand 7
A
265 283anti-parallel
Strand 8
A
220 233anti-parallel
Strand 9
A
180 185anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
143 146anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
351 352anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 445first strand
Strand 2
A
392 401anti-parallel
Strand 3
A
481 489parallel
Strand 4
A
493 499anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 427first strand
Strand 2
A
409 415anti-parallel
Strand 3
A
449 458anti-parallel
Strand 4
A
468 476anti-parallel
Strand 5
A
449 458anti-parallel
Strand 6
A
404 406anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
376 390parallel
Strand 3
B
74 87anti-parallel
Strand 4
B
66 70anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 93first strand
Strand 2
B
359 366anti-parallel
Strand 3
B
265 273anti-parallel
Strand 4
B
231 233anti-parallel
Strand 5
B
265 273anti-parallel
Strand 6
B
107 109anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 132first strand
Strand 2
B
143 146anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 176first strand
Strand 2
B
350 352anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 185first strand
Strand 2
B
220 227anti-parallel
Strand 3
B
276 283anti-parallel
Strand 4
B
316 323anti-parallel
Strand 5
B
333 335anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 445first strand
Strand 2
B
392 401anti-parallel
Strand 3
B
481 489parallel
Strand 4
B
493 499anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 427first strand
Strand 2
B
409 415anti-parallel
Strand 3
B
449 458anti-parallel
Strand 4
B
468 476anti-parallel
Strand 5
B
449 458anti-parallel
Strand 6
B
404 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il