Analysis of interatomic Contacts of Structural Units in PDB entry:
1M3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M3S entry

There are 2 chains in PDB entry 1M3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 185
B
 GLY 0GLU 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1M3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 19Right-handed alpha
Helix 2
2
A
22 36Right-handed alpha
Helix 3
3
A
44 61Right-handed alpha
Helix 4
4
A
91 104Right-handed alpha
Helix 5
5
A
117 123Right-handed alpha
Helix 6
6
A
148 170Right-handed alpha
Helix 7
7
B
2 21Right-handed alpha
Helix 8
8
B
22 36Right-handed alpha
Helix 9
9
B
44 61Right-handed alpha
Helix 10
10
B
91 104Right-handed alpha
Helix 11
11
B
117 123Right-handed alpha
Helix 12
12
B
132 138Right-handed alpha
Helix 13
13
B
148 170Right-handed alpha
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There are 2 sheets in PDB entry 1M3S. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
39 42parallel
Strand 3
A
81 85parallel
Strand 4
A
107 112parallel
Strand 5
A
125 128parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
39 42parallel
Strand 3
B
81 85parallel
Strand 4
B
107 112parallel
Strand 5
B
125 128parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il