Analysis of interatomic Contacts of Structural Units in PDB entry:
1M41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M41 entry

There are 2 chains in PDB entry 1M41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 361
B
 SER 1001LEU 1361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1M41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 42Right-handed alpha
Helix 2
2
A
56 63Right-handed alpha
Helix 3
3
A
85 98Right-handed alpha
Helix 4
4
A
114 119Right-handed 310
Helix 5
5
A
123 142Right-handed alpha
Helix 6
6
A
179 190Right-handed alpha
Helix 7
7
A
199 216Right-handed alpha
Helix 8
8
A
234 247Right-handed alpha
Helix 9
9
A
291 295Right-handed 310
Helix 10
10
A
308 322Right-handed alpha
Helix 11
11
A
334 343Right-handed alpha
Helix 12
12
A
344 348Right-handed 310
Helix 13
13
B
1027 1042Right-handed alpha
Helix 14
14
B
1056 1063Right-handed alpha
Helix 15
15
B
1078 1082Right-handed 310
Helix 16
16
B
1083 1098Right-handed alpha
Helix 17
17
B
1113 1118Right-handed alpha
Helix 18
18
B
1123 1142Right-handed alpha
Helix 19
19
B
1180 1190Right-handed alpha
Helix 20
20
B
1199 1216Right-handed alpha
Helix 21
21
B
1234 1247Right-handed alpha
Helix 22
22
B
1291 1296Right-handed 310
Helix 23
23
B
1308 1321Right-handed alpha
Helix 24
24
B
1332 1344Right-handed alpha
Helix 25
25
B
1345 1348Right-handed 310
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There are 8 sheets in PDB entry 1M41. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
45 48parallel
Strand 3
A
72 77parallel
Strand 4
A
102 106parallel
Strand 5
A
173 175parallel
Strand 6
A
192 196parallel
Strand 7
A
222 226parallel
Strand 8
A
323 327parallel
Strand 9
A
3 7parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
23 24anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
155 159anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
303 307parallel
Strand 3
A
289 290anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1003 1007first strand
Strand 2
B
1045 1048parallel
Strand 3
B
1072 1077parallel
Strand 4
B
1102 1106parallel
Strand 5
B
1173 1175parallel
Strand 6
B
1192 1196parallel
Strand 7
B
1222 1226parallel
Strand 8
B
1323 1327parallel
Strand 9
B
1003 1007parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1013 1014first strand
Strand 2
B
1023 1024anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1147 1150first strand
Strand 2
B
1155 1159anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1228 1232first strand
Strand 2
B
1303 1307parallel
Strand 3
B
1289 1290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il