Analysis of interatomic Contacts of Structural Units in PDB entry:
1M55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M55 entry

There are 2 chains in PDB entry 1M55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 193
B
 MET 1SER 193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1M55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 33Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
49 72Right-handed alpha
Helix 4
4
A
100 119Right-handed alpha
Helix 5
5
A
148 154Right-handed alpha
Helix 6
6
A
169 173Right-handed 310
Helix 7
7
A
174 177Right-handed 310
Helix 8
8
A
178 192Right-handed alpha
Helix 9
9
B
23 33Right-handed alpha
Helix 10
10
B
44 48Right-handed 310
Helix 11
11
B
49 72Right-handed alpha
Helix 12
12
B
100 119Right-handed alpha
Helix 13
13
B
148 154Right-handed alpha
Helix 14
14
B
169 173Right-handed 310
Helix 15
15
B
174 177Right-handed 310
Helix 16
16
B
178 192Right-handed alpha
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There are 4 sheets in PDB entry 1M55. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 167first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
3 10anti-parallel
Strand 5
A
131 133anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 167first strand
Strand 2
A
77 83anti-parallel
Strand 3
A
88 95anti-parallel
Strand 4
A
3 10anti-parallel
Strand 5
A
145 146anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 167first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
3 10anti-parallel
Strand 5
B
131 133anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 167first strand
Strand 2
B
77 83anti-parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
3 10anti-parallel
Strand 5
B
145 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il