Analysis of interatomic Contacts of Structural Units in PDB entry:
1M56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M56 entry

There are 8 chains in PDB entry 1M56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14TRP 560
B
 LEU 30LEU 289
C
 ALA 2GLN 266
D
 GLY 10ALA 51
G
 ARG 14TRP 560
H
 LEU 30LEU 289
I
 ALA 2GLN 266
J
 GLY 10ALA 51
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 1M56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
25 57Right-handed alpha
Helix 3
3
A
65 69Right-handed 310
Helix 4
4
A
71 80Right-handed alpha
Helix 5
5
A
84 88Right-handed 310
Helix 6
6
A
91 110Right-handed alpha
Helix 7
7
A
110 116Right-handed alpha
Helix 8
8
A
122 129Right-handed alpha
Helix 9
9
A
135 156Right-handed alpha
Helix 10
10
A
162 164Right-handed 310
Helix 11
11
A
177 182Right-handed alpha
Helix 12
12
A
185 215Right-handed alpha
Helix 13
13
A
221 225Right-handed 310
Helix 14
14
A
226 259Right-handed alpha
Helix 15
15
A
265 269Right-handed 310
Helix 16
16
A
271 307Right-handed alpha
Helix 17
17
A
312 327Right-handed alpha
Helix 18
18
A
328 329Right-handed 310
Helix 19
19
A
330 336Right-handed 310
Helix 20
20
A
341 355Right-handed alpha
Helix 21
21
A
355 371Right-handed alpha
Helix 22
22
A
378 403Right-handed alpha
Helix 23
23
A
403 411Right-handed alpha
Helix 24
24
A
413 426Right-handed alpha
Helix 25
25
A
427 445Right-handed alpha
Helix 26
26
A
449 469Right-handed alpha
Helix 27
27
A
469 477Right-handed alpha
Helix 28
28
A
487 489Right-handed 310
Helix 29
29
A
490 522Right-handed alpha
Helix 30
30
A
537 542Right-handed 310
Helix 31
31
A
556 560Right-handed 310
Helix 32
32
B
48 83Right-handed alpha
Helix 33
33
B
97 128Right-handed alpha
Helix 34
34
B
163 167Right-handed 310
Helix 35
35
B
173 184Right-handed alpha
Helix 36
36
B
186 190Right-handed 310
Helix 37
37
B
222 225Right-handed 310
Helix 38
38
B
258 262Right-handed 310
Helix 39
39
B
271 282Right-handed alpha
Helix 40
40
B
283 285Right-handed 310
Helix 41
41
C
16 37Right-handed alpha
Helix 42
42
C
41 68Right-handed alpha
Helix 43
43
C
72 107Right-handed alpha
Helix 44
44
C
133 158Right-handed alpha
Helix 45
45
C
160 188Right-handed alpha
Helix 46
46
C
196 229Right-handed alpha
Helix 47
47
C
237 262Right-handed alpha
Helix 48
48
D
18 50Right-handed alpha
Helix 49
49
G
15 23Right-handed alpha
Helix 50
50
G
25 57Right-handed alpha
Helix 51
51
G
65 69Right-handed 310
Helix 52
52
G
71 80Right-handed alpha
Helix 53
53
G
84 88Right-handed 310
Helix 54
54
G
91 110Right-handed alpha
Helix 55
55
G
110 116Right-handed alpha
Helix 56
56
G
123 129Right-handed alpha
Helix 57
57
G
135 156Right-handed alpha
Helix 58
58
G
177 182Right-handed alpha
Helix 59
59
G
185 215Right-handed alpha
Helix 60
60
G
221 225Right-handed 310
Helix 61
61
G
226 259Right-handed alpha
Helix 62
62
G
265 269Right-handed 310
Helix 63
63
G
271 307Right-handed alpha
Helix 64
64
G
312 327Right-handed alpha
Helix 65
65
G
328 329Right-handed 310
Helix 66
66
G
330 336Right-handed 310
Helix 67
67
G
341 355Right-handed alpha
Helix 68
68
G
355 371Right-handed alpha
Helix 69
69
G
378 403Right-handed alpha
Helix 70
70
G
403 411Right-handed alpha
Helix 71
71
G
413 426Right-handed alpha
Helix 72
72
G
427 445Right-handed alpha
Helix 73
73
G
449 469Right-handed alpha
Helix 74
74
G
469 477Right-handed alpha
Helix 75
75
G
490 522Right-handed alpha
Helix 76
76
G
537 542Right-handed 310
Helix 77
77
G
556 560Right-handed 310
Helix 78
78
H
48 83Right-handed alpha
Helix 79
79
H
97 128Right-handed alpha
Helix 80
80
H
163 167Right-handed 310
Helix 81
81
H
173 184Right-handed alpha
Helix 82
82
H
186 190Right-handed 310
Helix 83
83
H
222 225Right-handed 310
Helix 84
84
H
271 282Right-handed alpha
Helix 85
85
H
283 285Right-handed 310
Helix 86
86
I
16 37Right-handed alpha
Helix 87
87
I
41 68Right-handed alpha
Helix 88
88
I
72 105Right-handed alpha
Helix 89
89
I
133 158Right-handed alpha
Helix 90
90
I
160 188Right-handed alpha
Helix 91
91
I
196 229Right-handed alpha
Helix 92
92
I
237 262Right-handed alpha
Helix 93
93
J
18 51Right-handed alpha
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There are 10 sheets in PDB entry 1M56. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
165 166anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
523 524anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 158first strand
Strand 2
B
144 149anti-parallel
Strand 3
B
134 141anti-parallel
Strand 4
B
205 212parallel
Strand 5
B
236 241anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
265 270parallel
Strand 3
B
246 250anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 221first strand
Strand 2
B
226 230anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
160 161first strand
Strand 2
G
165 166anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
446 447first strand
Strand 2
G
523 524anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
154 158first strand
Strand 2
H
144 149anti-parallel
Strand 3
H
134 141anti-parallel
Strand 4
H
205 212parallel
Strand 5
H
236 241anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
198 201first strand
Strand 2
H
264 270parallel
Strand 3
H
246 251anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
217 220first strand
Strand 2
H
227 230anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il