Analysis of interatomic Contacts of Structural Units in PDB entry:
1M57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M57 entry

There are 8 chains in PDB entry 1M57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 14TRP 560
B
 LEU 30LEU 289
C
 ALA 2GLN 266
D
 GLY 8ALA 49
G
 ARG 14TRP 560
H
 LEU 30LEU 289
I
 ALA 2GLN 266
J
 GLY 8ALA 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 1M57. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
25 57Right-handed alpha
Helix 3
3
A
65 69Right-handed 310
Helix 4
4
A
71 79Right-handed alpha
Helix 5
5
A
91 109Right-handed alpha
Helix 6
6
A
112 118Right-handed alpha
Helix 7
7
A
118 129Right-handed alpha
Helix 8
8
A
135 156Right-handed alpha
Helix 9
9
A
161 165Right-handed 310
Helix 10
10
A
177 182Right-handed alpha
Helix 11
11
A
185 215Right-handed alpha
Helix 12
12
A
221 225Right-handed 310
Helix 13
13
A
226 260Right-handed alpha
Helix 14
14
A
265 269Right-handed 310
Helix 15
15
A
271 281Right-handed alpha
Helix 16
16
A
284 306Right-handed alpha
Helix 17
17
A
312 327Right-handed alpha
Helix 18
18
A
328 329Right-handed 310
Helix 19
19
A
330 336Right-handed 310
Helix 20
20
A
341 355Right-handed alpha
Helix 21
21
A
355 371Right-handed alpha
Helix 22
22
A
378 403Right-handed alpha
Helix 23
23
A
403 411Right-handed alpha
Helix 24
24
A
413 426Right-handed alpha
Helix 25
25
A
427 440Right-handed alpha
Helix 26
26
A
449 477Right-handed alpha
Helix 27
27
A
487 489Right-handed 310
Helix 28
28
A
490 522Right-handed alpha
Helix 29
29
A
556 560Right-handed 310
Helix 30
30
B
48 83Right-handed alpha
Helix 31
31
B
97 128Right-handed alpha
Helix 32
32
B
163 167Right-handed 310
Helix 33
33
B
173 184Right-handed alpha
Helix 34
34
B
186 190Right-handed 310
Helix 35
35
B
222 225Right-handed 310
Helix 36
36
B
257 262Right-handed 310
Helix 37
37
B
271 284Right-handed alpha
Helix 38
38
C
16 36Right-handed alpha
Helix 39
39
C
41 68Right-handed alpha
Helix 40
40
C
72 107Right-handed alpha
Helix 41
41
C
133 158Right-handed alpha
Helix 42
42
C
160 188Right-handed alpha
Helix 43
43
C
196 229Right-handed alpha
Helix 44
44
C
237 261Right-handed alpha
Helix 45
45
D
16 49Right-handed alpha
Helix 46
46
G
15 22Right-handed alpha
Helix 47
47
G
25 57Right-handed alpha
Helix 48
48
G
65 69Right-handed 310
Helix 49
49
G
71 79Right-handed alpha
Helix 50
50
G
91 110Right-handed alpha
Helix 51
51
G
112 118Right-handed alpha
Helix 52
52
G
118 129Right-handed alpha
Helix 53
53
G
135 156Right-handed alpha
Helix 54
54
G
161 165Right-handed 310
Helix 55
55
G
177 182Right-handed alpha
Helix 56
56
G
185 215Right-handed alpha
Helix 57
57
G
221 225Right-handed 310
Helix 58
58
G
226 259Right-handed alpha
Helix 59
59
G
265 269Right-handed 310
Helix 60
60
G
271 281Right-handed alpha
Helix 61
61
G
284 306Right-handed alpha
Helix 62
62
G
312 327Right-handed alpha
Helix 63
63
G
328 329Right-handed 310
Helix 64
64
G
330 336Right-handed 310
Helix 65
65
G
341 355Right-handed alpha
Helix 66
66
G
355 371Right-handed alpha
Helix 67
67
G
378 403Right-handed alpha
Helix 68
68
G
403 411Right-handed alpha
Helix 69
69
G
413 426Right-handed alpha
Helix 70
70
G
427 445Right-handed alpha
Helix 71
71
G
449 469Right-handed alpha
Helix 72
72
G
470 477Right-handed alpha
Helix 73
73
G
487 489Right-handed 310
Helix 74
74
G
490 522Right-handed alpha
Helix 75
75
G
538 542Right-handed 310
Helix 76
76
H
48 83Right-handed alpha
Helix 77
77
H
97 128Right-handed alpha
Helix 78
78
H
163 167Right-handed 310
Helix 79
79
H
173 184Right-handed alpha
Helix 80
80
H
186 193Right-handed 310
Helix 81
81
H
222 225Right-handed 310
Helix 82
82
H
257 262Right-handed 310
Helix 83
83
H
271 282Right-handed alpha
Helix 84
84
I
16 36Right-handed alpha
Helix 85
85
I
41 68Right-handed alpha
Helix 86
86
I
72 107Right-handed alpha
Helix 87
87
I
133 158Right-handed alpha
Helix 88
88
I
160 188Right-handed alpha
Helix 89
89
I
196 230Right-handed alpha
Helix 90
90
I
237 262Right-handed alpha
Helix 91
91
J
16 49Right-handed alpha
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There are 9 sheets in PDB entry 1M57. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
523 524anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 140first strand
Strand 2
B
205 212parallel
Strand 3
B
236 241anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
154 156anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
227 230anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 250first strand
Strand 2
B
265 269anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
446 447first strand
Strand 2
G
523 524anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
154 156first strand
Strand 2
H
147 149anti-parallel
Strand 3
H
137 140anti-parallel
Strand 4
H
205 212parallel
Strand 5
H
236 241anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
217 220first strand
Strand 2
H
227 230anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
246 250first strand
Strand 2
H
265 269anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il