Analysis of interatomic Contacts of Structural Units in PDB entry:
1M5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M5N entry

There are 2 chains in PDB entry 1M5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
S
 MET 1ALA 485
Q
 TYR 67PRO 94
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 1M5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
S
4 10Right-handed alpha
Helix 2
2
S
16 25Right-handed alpha
Helix 3
3
S
26 31Right-handed alpha
Helix 4
4
S
32 44Right-handed alpha
Helix 5
5
S
50 64Right-handed alpha
Helix 6
6
S
72 82Right-handed alpha
Helix 7
7
S
87 95Right-handed alpha
Helix 8
8
S
107 118Right-handed alpha
Helix 9
9
S
128 138Right-handed alpha
Helix 10
10
S
143 160Right-handed alpha
Helix 11
11
S
169 182Right-handed alpha
Helix 12
12
S
187 202Right-handed alpha
Helix 13
13
S
205 211Right-handed alpha
Helix 14
14
S
211 225Right-handed alpha
Helix 15
15
S
226 228Right-handed 310
Helix 16
16
S
230 248Right-handed alpha
Helix 17
17
S
250 255Right-handed 310
Helix 18
18
S
259 268Right-handed alpha
Helix 19
19
S
272 300Right-handed alpha
Helix 20
20
S
313 330Right-handed alpha
Helix 21
21
S
343 359Right-handed alpha
Helix 22
22
S
362 372Right-handed alpha
Helix 23
23
S
373 375Right-handed 310
Helix 24
24
S
380 393Right-handed alpha
Helix 25
25
S
398 401Right-handed 310
Helix 26
26
S
402 415Right-handed alpha
Helix 27
27
S
421 438Right-handed alpha
Helix 28
28
S
440 444Right-handed 310
Helix 29
29
S
445 461Right-handed alpha
Helix 30
30
S
463 483Right-handed alpha
Helix 31
31
Q
80 84Right-handed 310
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There are no sheets in PDB entry 1M5N
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il