Analysis of interatomic Contacts of Structural Units in PDB entry:
1M5S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1M5S entry

There are 4 chains in PDB entry 1M5S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 297
B	MET 1001	PHE 1297
C	MET 2001	PHE 2297
D	MET 3001	PHE 3297

There are 36 helices in PDB entry 1M5S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	29	42	Right-handed alpha
Helix 2	2	A	80	96	Right-handed alpha
Helix 3	3	A	116	123	Right-handed alpha
Helix 4	4	A	124	126	Right-handed 310
Helix 5	5	A	172	188	Right-handed alpha
Helix 6	6	A	197	201	Right-handed 310
Helix 7	7	A	221	232	Right-handed 310
Helix 8	8	A	253	269	Right-handed alpha
Helix 9	9	A	294	297	Right-handed 310
Helix 10	10	B	1029	1041	Right-handed alpha
Helix 11	11	B	1080	1096	Right-handed alpha
Helix 12	12	B	1116	1123	Right-handed alpha
Helix 13	13	B	1124	1126	Right-handed 310
Helix 14	14	B	1172	1188	Right-handed alpha
Helix 15	15	B	1197	1201	Right-handed 310
Helix 16	16	B	1221	1229	Right-handed 310
Helix 17	17	B	1253	1269	Right-handed alpha
Helix 18	18	B	1294	1297	Right-handed 310
Helix 19	19	C	2029	2041	Right-handed alpha
Helix 20	20	C	2080	2096	Right-handed alpha
Helix 21	21	C	2116	2123	Right-handed alpha
Helix 22	22	C	2124	2126	Right-handed 310
Helix 23	23	C	2172	2188	Right-handed alpha
Helix 24	24	C	2197	2201	Right-handed 310
Helix 25	25	C	2221	2232	Right-handed 310
Helix 26	26	C	2253	2269	Right-handed alpha
Helix 27	27	C	2293	2297	Right-handed alpha
Helix 28	28	D	3029	3042	Right-handed alpha
Helix 29	29	D	3080	3096	Right-handed alpha
Helix 30	30	D	3116	3123	Right-handed alpha
Helix 31	31	D	3124	3126	Right-handed 310
Helix 32	32	D	3172	3188	Right-handed alpha
Helix 33	33	D	3197	3199	Right-handed 310
Helix 34	34	D	3221	3232	Right-handed 310
Helix 35	35	D	3253	3269	Right-handed alpha
Helix 36	36	D	3294	3297	Right-handed 310

There are 6 sheets in PDB entry 1M5S. Click on sheet of interest to get list of strands forming it: 1, 16, 28, 33, 45, 50,

There are 20 strands in 1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	274	278	parallel
Strand 3	A	155	170	anti-parallel
Strand 4	A	113	115	anti-parallel
Strand 5	A	155	170	anti-parallel
Strand 6	A	243	251	anti-parallel
Strand 7	A	193	194	anti-parallel
Strand 8	A	243	251	anti-parallel
Strand 9	A	155	170	anti-parallel
Strand 10	A	12	26	anti-parallel
Strand 11	A	71	78	anti-parallel
Strand 12	A	53	60	anti-parallel
Strand 13	A	71	78	anti-parallel
Strand 14	A	12	26	anti-parallel
Strand 15	A	289	292	anti-parallel
Strand 16	A	12	26	anti-parallel
Strand 17	A	103	106	anti-parallel
Strand 18	A	147	152	parallel
Strand 19	A	137	144	anti-parallel
Strand 20	A	130	134	parallel

Back to list of sheets
Back to top of page

There are 20 strands in 16 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1006	1008	first strand
Strand 2	B	1274	1278	parallel
Strand 3	B	1155	1170	anti-parallel
Strand 4	B	1113	1115	anti-parallel
Strand 5	B	1155	1170	anti-parallel
Strand 6	B	1243	1251	anti-parallel
Strand 7	B	1193	1194	anti-parallel
Strand 8	B	1243	1251	anti-parallel
Strand 9	B	1155	1170	anti-parallel
Strand 10	B	1012	1026	anti-parallel
Strand 11	B	1289	1292	anti-parallel
Strand 12	B	1012	1026	anti-parallel
Strand 13	B	1071	1078	anti-parallel
Strand 14	B	1053	1060	anti-parallel
Strand 15	B	1071	1078	anti-parallel
Strand 16	B	1012	1026	anti-parallel
Strand 17	B	1103	1106	anti-parallel
Strand 18	B	1147	1152	parallel
Strand 19	B	1137	1144	anti-parallel
Strand 20	B	1130	1134	parallel

Back to list of sheets
Back to top of page

There are 1 strands in 28 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1218	1219	first strand

Back to list of sheets
Back to top of page

There are 20 strands in 33 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2006	2008	first strand
Strand 2	C	2274	2278	parallel
Strand 3	C	2155	2170	anti-parallel
Strand 4	C	2113	2115	anti-parallel
Strand 5	C	2155	2170	anti-parallel
Strand 6	C	2243	2251	anti-parallel
Strand 7	C	2193	2194	anti-parallel
Strand 8	C	2243	2251	anti-parallel
Strand 9	C	2155	2170	anti-parallel
Strand 10	C	2012	2026	anti-parallel
Strand 11	C	2289	2292	anti-parallel
Strand 12	C	2012	2026	anti-parallel
Strand 13	C	2071	2078	anti-parallel
Strand 14	C	2053	2060	anti-parallel
Strand 15	C	2071	2078	anti-parallel
Strand 16	C	2012	2026	anti-parallel
Strand 17	C	2103	2106	anti-parallel
Strand 18	C	2147	2152	parallel
Strand 19	C	2137	2144	anti-parallel
Strand 20	C	2130	2134	parallel

Back to list of sheets
Back to top of page

There are 1 strands in 45 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2218	2219	first strand

Back to list of sheets
Back to top of page

There are 20 strands in 50 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3006	3008	first strand
Strand 2	D	3274	3278	parallel
Strand 3	D	3155	3170	anti-parallel
Strand 4	D	3113	3115	anti-parallel
Strand 5	D	3155	3170	anti-parallel
Strand 6	D	3243	3251	anti-parallel
Strand 7	D	3201	3202	anti-parallel
Strand 8	D	3243	3251	anti-parallel
Strand 9	D	3155	3170	anti-parallel
Strand 10	D	3012	3026	anti-parallel
Strand 11	D	3289	3292	anti-parallel
Strand 12	D	3012	3026	anti-parallel
Strand 13	D	3071	3078	anti-parallel
Strand 14	D	3053	3060	anti-parallel
Strand 15	D	3071	3078	anti-parallel
Strand 16	D	3012	3026	anti-parallel
Strand 17	D	3103	3106	anti-parallel
Strand 18	D	3147	3152	parallel
Strand 19	D	3137	3144	anti-parallel
Strand 20	D	3130	3134	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1M5S

Analysis of interatomic Contacts of Structural Units in PDB entry:
1M5S