Analysis of interatomic Contacts of Structural Units in PDB entry:
1M5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M5W entry

There are 8 chains in PDB entry 1M5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 243
B
 ALA 2GLY 243
C
 ALA 2GLY 243
D
 ALA 2GLY 243
E
 ALA 2GLY 243
F
 ALA 2GLY 243
G
 ALA 2GLY 243
H
 ALA 2GLY 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 1M5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 19Right-handed alpha
Helix 2
2
A
26 36Right-handed alpha
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
A
76 87Right-handed alpha
Helix 5
5
A
109 111Right-handed 310
Helix 6
6
A
112 126Right-handed alpha
Helix 7
7
A
137 147Right-handed alpha
Helix 8
8
A
156 162Right-handed alpha
Helix 9
9
A
164 185Right-handed alpha
Helix 10
10
A
199 205Right-handed alpha
Helix 11
11
A
215 226Right-handed alpha
Helix 12
12
A
226 243Right-handed alpha
Helix 13
13
B
10 19Right-handed alpha
Helix 14
14
B
26 36Right-handed alpha
Helix 15
15
B
54 65Right-handed alpha
Helix 16
16
B
76 87Right-handed alpha
Helix 17
17
B
109 111Right-handed 310
Helix 18
18
B
112 126Right-handed alpha
Helix 19
19
B
137 147Right-handed alpha
Helix 20
20
B
156 162Right-handed alpha
Helix 21
21
B
164 185Right-handed alpha
Helix 22
22
B
199 205Right-handed alpha
Helix 23
23
B
215 226Right-handed alpha
Helix 24
24
B
226 242Right-handed alpha
Helix 25
25
C
10 19Right-handed alpha
Helix 26
26
C
26 36Right-handed alpha
Helix 27
27
C
54 65Right-handed alpha
Helix 28
28
C
76 87Right-handed alpha
Helix 29
29
C
109 111Right-handed 310
Helix 30
30
C
112 126Right-handed alpha
Helix 31
31
C
137 148Right-handed alpha
Helix 32
32
C
156 162Right-handed alpha
Helix 33
33
C
164 185Right-handed alpha
Helix 34
34
C
199 205Right-handed alpha
Helix 35
35
C
215 226Right-handed alpha
Helix 36
36
C
226 243Right-handed alpha
Helix 37
37
D
10 19Right-handed alpha
Helix 38
38
D
26 36Right-handed alpha
Helix 39
39
D
54 65Right-handed alpha
Helix 40
40
D
76 87Right-handed alpha
Helix 41
41
D
109 111Right-handed 310
Helix 42
42
D
112 126Right-handed alpha
Helix 43
43
D
137 148Right-handed alpha
Helix 44
44
D
156 161Right-handed alpha
Helix 45
45
D
164 185Right-handed alpha
Helix 46
46
D
199 205Right-handed alpha
Helix 47
47
D
215 226Right-handed alpha
Helix 48
48
D
226 243Right-handed alpha
Helix 49
49
E
10 18Right-handed alpha
Helix 50
50
E
26 36Right-handed alpha
Helix 51
51
E
54 65Right-handed alpha
Helix 52
52
E
76 87Right-handed alpha
Helix 53
53
E
112 125Right-handed alpha
Helix 54
54
E
137 147Right-handed alpha
Helix 55
55
E
156 162Right-handed alpha
Helix 56
56
E
164 185Right-handed alpha
Helix 57
57
E
199 205Right-handed alpha
Helix 58
58
E
215 226Right-handed alpha
Helix 59
59
E
226 243Right-handed alpha
Helix 60
60
F
10 19Right-handed alpha
Helix 61
61
F
26 36Right-handed alpha
Helix 62
62
F
54 65Right-handed alpha
Helix 63
63
F
76 87Right-handed alpha
Helix 64
64
F
109 111Right-handed 310
Helix 65
65
F
112 125Right-handed alpha
Helix 66
66
F
137 148Right-handed alpha
Helix 67
67
F
156 162Right-handed alpha
Helix 68
68
F
164 185Right-handed alpha
Helix 69
69
F
199 205Right-handed alpha
Helix 70
70
F
215 226Right-handed alpha
Helix 71
71
F
226 243Right-handed alpha
Helix 72
72
G
10 20Right-handed alpha
Helix 73
73
G
26 36Right-handed alpha
Helix 74
74
G
54 65Right-handed alpha
Helix 75
75
G
76 87Right-handed alpha
Helix 76
76
G
109 111Right-handed 310
Helix 77
77
G
112 125Right-handed alpha
Helix 78
78
G
137 147Right-handed alpha
Helix 79
79
G
156 162Right-handed alpha
Helix 80
80
G
164 185Right-handed alpha
Helix 81
81
G
199 205Right-handed alpha
Helix 82
82
G
215 226Right-handed alpha
Helix 83
83
G
226 243Right-handed alpha
Helix 84
84
H
10 19Right-handed alpha
Helix 85
85
H
26 36Right-handed alpha
Helix 86
86
H
54 65Right-handed alpha
Helix 87
87
H
76 87Right-handed alpha
Helix 88
88
H
97 101Right-handed 310
Helix 89
89
H
109 111Right-handed 310
Helix 90
90
H
112 126Right-handed alpha
Helix 91
91
H
139 147Right-handed alpha
Helix 92
92
H
156 162Right-handed alpha
Helix 93
93
H
164 185Right-handed alpha
Helix 94
94
H
199 205Right-handed alpha
Helix 95
95
H
215 226Right-handed alpha
Helix 96
96
H
226 242Right-handed alpha
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There are 8 sheets in PDB entry 1M5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
41 45parallel
Strand 3
A
68 73parallel
Strand 4
A
90 93parallel
Strand 5
A
129 134parallel
Strand 6
A
151 155parallel
Strand 7
A
188 192parallel
Strand 8
A
209 214parallel
Strand 9
A
5 9parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
41 45parallel
Strand 3
B
68 73parallel
Strand 4
B
90 93parallel
Strand 5
B
129 134parallel
Strand 6
B
151 155parallel
Strand 7
B
188 192parallel
Strand 8
B
209 214parallel
Strand 9
B
5 9parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 9first strand
Strand 2
C
41 45parallel
Strand 3
C
68 74parallel
Strand 4
C
90 94parallel
Strand 5
C
129 134parallel
Strand 6
C
151 155parallel
Strand 7
C
188 192parallel
Strand 8
C
209 214parallel
Strand 9
C
5 9parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 9first strand
Strand 2
D
41 45parallel
Strand 3
D
69 73parallel
Strand 4
D
90 93parallel
Strand 5
D
129 134parallel
Strand 6
D
151 154parallel
Strand 7
D
188 191parallel
Strand 8
D
209 214parallel
Strand 9
D
5 9parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 9first strand
Strand 2
E
41 45parallel
Strand 3
E
69 73parallel
Strand 4
E
90 93parallel
Strand 5
E
129 134parallel
Strand 6
E
151 154parallel
Strand 7
E
188 191parallel
Strand 8
E
209 214parallel
Strand 9
E
5 9parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 9first strand
Strand 2
F
41 45parallel
Strand 3
F
68 73parallel
Strand 4
F
90 93parallel
Strand 5
F
129 134parallel
Strand 6
F
151 155parallel
Strand 7
F
188 192parallel
Strand 8
F
209 214parallel
Strand 9
F
5 9parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
5 9first strand
Strand 2
G
41 45parallel
Strand 3
G
69 73parallel
Strand 4
G
90 93parallel
Strand 5
G
129 134parallel
Strand 6
G
151 155parallel
Strand 7
G
188 192parallel
Strand 8
G
209 214parallel
Strand 9
G
5 9parallel
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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
5 9first strand
Strand 2
H
41 45parallel
Strand 3
H
69 73parallel
Strand 4
H
90 93parallel
Strand 5
H
129 134parallel
Strand 6
H
151 155parallel
Strand 7
H
188 192parallel
Strand 8
H
209 214parallel
Strand 9
H
5 9parallel
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