Analysis of interatomic Contacts of Structural Units in PDB entry:
1M5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M5Y entry

There are 4 chains in PDB entry 1M5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 25SER 427
B
 VAL 25SER 427
C
 VAL 25SER 427
D
 VAL 25ASN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 1M5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 55Right-handed alpha
Helix 2
2
A
62 87Right-handed alpha
Helix 3
3
A
92 107Right-handed alpha
Helix 4
4
A
110 122Right-handed alpha
Helix 5
5
A
124 149Right-handed alpha
Helix 6
6
A
155 163Right-handed alpha
Helix 7
7
A
188 208Right-handed alpha
Helix 8
8
A
211 220Right-handed alpha
Helix 9
9
A
224 228Right-handed 310
Helix 10
10
A
235 239Right-handed 310
Helix 11
11
A
240 245Right-handed alpha
Helix 12
12
A
246 249Right-handed 310
Helix 13
13
A
299 316Right-handed alpha
Helix 14
14
A
320 329Right-handed alpha
Helix 15
15
A
334 338Right-handed 310
Helix 16
16
A
345 349Right-handed 310
Helix 17
17
A
350 359Right-handed alpha
Helix 18
18
A
395 421Right-handed alpha
Helix 19
19
B
39 55Right-handed alpha
Helix 20
20
B
62 87Right-handed alpha
Helix 21
21
B
92 107Right-handed alpha
Helix 22
22
B
110 122Right-handed alpha
Helix 23
23
B
124 148Right-handed alpha
Helix 24
24
B
155 163Right-handed alpha
Helix 25
25
B
188 208Right-handed alpha
Helix 26
26
B
211 220Right-handed alpha
Helix 27
27
B
224 228Right-handed 310
Helix 28
28
B
235 239Right-handed 310
Helix 29
29
B
240 245Right-handed alpha
Helix 30
30
B
299 316Right-handed alpha
Helix 31
31
B
320 329Right-handed alpha
Helix 32
32
B
345 349Right-handed 310
Helix 33
33
B
350 360Right-handed alpha
Helix 34
34
B
396 420Right-handed alpha
Helix 35
35
C
39 55Right-handed alpha
Helix 36
36
C
62 87Right-handed alpha
Helix 37
37
C
92 107Right-handed alpha
Helix 38
38
C
110 122Right-handed alpha
Helix 39
39
C
124 148Right-handed alpha
Helix 40
40
C
155 163Right-handed alpha
Helix 41
41
C
188 208Right-handed alpha
Helix 42
42
C
211 220Right-handed alpha
Helix 43
43
C
222 228Right-handed 310
Helix 44
44
C
235 239Right-handed 310
Helix 45
45
C
240 245Right-handed alpha
Helix 46
46
C
299 316Right-handed alpha
Helix 47
47
C
320 329Right-handed alpha
Helix 48
48
C
345 349Right-handed 310
Helix 49
49
C
350 359Right-handed alpha
Helix 50
50
C
396 420Right-handed alpha
Helix 51
51
D
39 55Right-handed alpha
Helix 52
52
D
62 87Right-handed alpha
Helix 53
53
D
92 107Right-handed alpha
Helix 54
54
D
110 122Right-handed alpha
Helix 55
55
D
124 150Right-handed alpha
Helix 56
56
D
155 163Right-handed alpha
Helix 57
57
D
188 208Right-handed alpha
Helix 58
58
D
211 220Right-handed alpha
Helix 59
59
D
224 228Right-handed 310
Helix 60
60
D
235 239Right-handed 310
Helix 61
61
D
240 245Right-handed alpha
Helix 62
62
D
246 249Right-handed 310
Helix 63
63
D
299 316Right-handed alpha
Helix 64
64
D
320 329Right-handed alpha
Helix 65
65
D
334 338Right-handed 310
Helix 66
66
D
345 349Right-handed 310
Helix 67
67
D
350 359Right-handed alpha
Helix 68
68
D
396 421Right-handed alpha
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There are 12 sheets in PDB entry 1M5Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
423 425anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 234first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
264 273anti-parallel
Strand 4
A
255 261anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 344first strand
Strand 2
A
282 292anti-parallel
Strand 3
A
375 386anti-parallel
Strand 4
A
369 370anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
423 424anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 234first strand
Strand 2
B
174 182anti-parallel
Strand 3
B
264 273anti-parallel
Strand 4
B
255 261anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 344first strand
Strand 2
B
285 292anti-parallel
Strand 3
B
374 382anti-parallel
Strand 4
B
369 371anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
28 32anti-parallel
Strand 3
C
423 425anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
230 234first strand
Strand 2
C
174 182anti-parallel
Strand 3
C
264 272anti-parallel
Strand 4
C
255 260anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 344first strand
Strand 2
C
285 292anti-parallel
Strand 3
C
375 382anti-parallel
Strand 4
C
369 370anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
36 38first strand
Strand 2
D
28 32anti-parallel
Strand 3
D
423 425anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
230 234first strand
Strand 2
D
174 182anti-parallel
Strand 3
D
264 273anti-parallel
Strand 4
D
255 261anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
340 344first strand
Strand 2
D
282 292anti-parallel
Strand 3
D
375 386anti-parallel
Strand 4
D
369 370anti-parallel
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