Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1M6B entry

There are 2 chains in PDB entry 1M6B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 8	PRO 580
B	SER 6	LEU 611

There are 23 helices in PDB entry 1M6B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	61	Right-handed 310
Helix 2	2	A	91	94	Right-handed 310
Helix 3	3	A	143	148	Right-handed alpha
Helix 4	4	A	220	224	Right-handed 310
Helix 5	5	A	328	333	Right-handed 310
Helix 6	6	A	345	351	Right-handed alpha
Helix 7	7	A	361	371	Right-handed 310
Helix 8	8	A	390	394	Right-handed 310
Helix 9	9	A	450	455	Right-handed alpha
Helix 10	10	A	470	475	Right-handed alpha
Helix 11	11	A	494	498	Right-handed 310
Helix 12	12	B	55	59	Right-handed 310
Helix 13	13	B	91	94	Right-handed 310
Helix 14	14	B	143	148	Right-handed alpha
Helix 15	15	B	168	172	Right-handed 310
Helix 16	16	B	192	196	Right-handed 310
Helix 17	17	B	328	333	Right-handed 310
Helix 18	18	B	345	351	Right-handed alpha
Helix 19	19	B	361	369	Right-handed 310
Helix 20	20	B	390	394	Right-handed 310
Helix 21	21	B	450	454	Right-handed 310
Helix 22	22	B	470	478	Right-handed alpha
Helix 23	23	B	494	498	Right-handed 310

There are 27 sheets in PDB entry 1M6B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	39	40	parallel
Strand 3	A	63	64	parallel
Strand 4	A	85	86	parallel
Strand 5	A	122	123	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	68	71	parallel
Strand 3	A	96	101	parallel
Strand 4	A	127	131	parallel
Strand 5	A	155	158	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	79	first strand
Strand 2	A	114	116	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	235	237	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	253	255	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	266	268	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	281	283	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	295	first strand
Strand 2	A	298	303	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	313	first strand
Strand 2	A	337	339	parallel
Strand 3	A	373	374	parallel
Strand 4	A	398	399	parallel
Strand 5	A	429	430	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	344	first strand
Strand 2	A	378	380	parallel
Strand 3	A	409	414	parallel
Strand 4	A	434	438	parallel
Strand 5	A	463	466	parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	510	511	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	523	526	first strand
Strand 2	A	529	532	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	562	first strand
Strand 2	A	565	567	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	39	41	parallel
Strand 3	B	63	64	parallel
Strand 4	B	85	86	parallel
Strand 5	B	122	123	parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	47	first strand
Strand 2	B	68	71	parallel
Strand 3	B	96	101	parallel
Strand 4	B	127	131	parallel
Strand 5	B	155	158	parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	79	first strand
Strand 2	B	114	116	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	232	first strand
Strand 2	B	235	237	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	266	268	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	281	283	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	295	first strand
Strand 2	B	298	303	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	337	339	parallel
Strand 3	B	373	374	parallel
Strand 4	B	398	399	parallel
Strand 5	B	429	430	parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	378	380	parallel
Strand 3	B	409	414	parallel
Strand 4	B	434	438	parallel
Strand 5	B	463	466	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	506	first strand
Strand 2	B	509	511	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	523	526	first strand
Strand 2	B	529	532	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	562	first strand
Strand 2	B	565	567	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	575	first strand
Strand 2	B	580	585	anti-parallel
Strand 3	B	591	593	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1M6B

Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6B