Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6D entry

There are 2 chains in PDB entry 1M6D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASP 212
B
 ALA 1ASP 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1M6D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 11Right-handed 310
Helix 2
2
A
24 43Right-handed alpha
Helix 3
3
A
49 57Right-handed alpha
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
67 78Right-handed alpha
Helix 6
6
A
98 102Right-handed 310
Helix 7
7
A
116 128Right-handed alpha
Helix 8
8
A
136 144Right-handed alpha
Helix 9
9
A
154 153Right-handed 310
Helix 10
10
A
198 202Right-handed 310
Helix 11
11
B
8 11Right-handed 310
Helix 12
12
B
24 43Right-handed alpha
Helix 13
13
B
49 57Right-handed alpha
Helix 14
14
B
61 65Right-handed 310
Helix 15
15
B
67 78Right-handed alpha
Helix 16
16
B
116 128Right-handed alpha
Helix 17
17
B
135 141Right-handed 310
Helix 18
18
B
154 157Right-handed 310
Helix 19
19
B
198 202Right-handed 310
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There are 6 sheets in PDB entry 1M6D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
186 190parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
5 6anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
186 190parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
130 134anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
207 210anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
186 190parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
5 6anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 149first strand
Strand 2
B
186 190parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
130 134anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 112first strand
Strand 2
B
207 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il