Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6E entry

There is 1 chain in PDB entry 1M6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 MET 1ASP 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1M6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
3 8Right-handed alpha
Helix 2
2
X
22 32Right-handed alpha
Helix 3
3
X
32 45Right-handed alpha
Helix 4
4
X
68 72Right-handed 310
Helix 5
5
X
73 83Right-handed alpha
Helix 6
6
X
103 109Right-handed alpha
Helix 7
7
X
180 199Right-handed alpha
Helix 8
8
X
226 239Right-handed alpha
Helix 9
9
X
247 251Right-handed 310
Helix 10
10
X
259 269Right-handed alpha
Helix 11
11
X
302 321Right-handed alpha
Helix 12
12
X
321 342Right-handed alpha
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There are 2 sheets in PDB entry 1M6E. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
121 127first strand
Strand 2
X
91 98parallel
Strand 3
X
52 53parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
121 127first strand
Strand 2
X
91 98parallel
Strand 3
X
56 58parallel
Strand 4
X
143 146parallel
Strand 5
X
204 211parallel
Strand 6
X
346 355anti-parallel
Strand 7
X
275 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il