Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6J entry

There are 2 chains in PDB entry 1M6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 261
B
 GLY 2LEU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1M6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
33 38Right-handed alpha
Helix 3
3
A
47 49Right-handed 310
Helix 4
4
A
50 60Right-handed alpha
Helix 5
5
A
63 65Right-handed 310
Helix 6
6
A
86 93Right-handed alpha
Helix 7
7
A
102 109Right-handed alpha
Helix 8
8
A
112 127Right-handed alpha
Helix 9
9
A
137 143Right-handed alpha
Helix 10
10
A
145 161Right-handed alpha
Helix 11
11
A
163 167Right-handed 310
Helix 12
12
A
175 179Right-handed 310
Helix 13
13
A
186 205Right-handed alpha
Helix 14
14
A
206 213Right-handed alpha
Helix 15
15
A
225 231Right-handed alpha
Helix 16
16
A
241 245Right-handed 310
Helix 17
17
A
246 255Right-handed alpha
Helix 18
18
A
256 260Right-handed 310
Helix 19
19
B
17 31Right-handed alpha
Helix 20
20
B
33 38Right-handed alpha
Helix 21
21
B
47 49Right-handed 310
Helix 22
22
B
50 60Right-handed alpha
Helix 23
23
B
63 65Right-handed 310
Helix 24
24
B
86 93Right-handed alpha
Helix 25
25
B
102 109Right-handed alpha
Helix 26
26
B
112 126Right-handed alpha
Helix 27
27
B
137 143Right-handed alpha
Helix 28
28
B
145 161Right-handed alpha
Helix 29
29
B
163 167Right-handed 310
Helix 30
30
B
175 179Right-handed 310
Helix 31
31
B
186 205Right-handed alpha
Helix 32
32
B
206 213Right-handed alpha
Helix 33
33
B
225 231Right-handed alpha
Helix 34
34
B
241 245Right-handed 310
Helix 35
35
B
246 255Right-handed alpha
Helix 36
36
B
256 261Right-handed 310
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There are 2 sheets in PDB entry 1M6J. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
40 46parallel
Strand 3
A
67 71parallel
Strand 4
A
97 100parallel
Strand 5
A
129 134parallel
Strand 6
A
169 173parallel
Strand 7
A
215 217parallel
Strand 8
A
237 240parallel
Strand 9
A
6 11parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 11first strand
Strand 2
B
41 46parallel
Strand 3
B
67 71parallel
Strand 4
B
97 100parallel
Strand 5
B
129 134parallel
Strand 6
B
169 173parallel
Strand 7
B
215 217parallel
Strand 8
B
237 240parallel
Strand 9
B
7 11parallel
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