Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6Q entry

There is 1 chain in PDB entry 1M6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 116ALA 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1M6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
116 140Right-handed alpha
Helix 2
2
A
141 143Right-handed 310
Helix 3
3
A
148 161Right-handed alpha
Helix 4
4
A
164 174Right-handed alpha
Helix 5
5
A
182 193Right-handed alpha
Helix 6
6
A
211 223Right-handed alpha
Helix 7
7
A
233 248Right-handed alpha
Helix 8
8
A
282 286Right-handed 310
Helix 9
9
A
314 318Right-handed 310
Helix 10
10
A
341 349Right-handed alpha
Helix 11
11
A
353 362Right-handed alpha
Helix 12
12
A
386 395Right-handed alpha
Helix 13
13
A
396 401Right-handed 310
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There are 3 sheets in PDB entry 1M6Q. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
467 471anti-parallel
Strand 3
A
459 460anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
203 204parallel
Strand 3
A
265 271anti-parallel
Strand 4
A
418 424parallel
Strand 5
A
382 383anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 293first strand
Strand 2
A
296 305anti-parallel
Strand 3
A
374 377anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il