Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6S entry

There are 8 chains in PDB entry 1M6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 198
A
 GLY 200SER 343
B
 MET 1SER 198
B
 GLY 200SER 343
C
 MET 1SER 198
C
 GLY 200SER 343
D
 MET 0SER 198
D
 GLY 200SER 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 1M6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 10Right-handed 310
Helix 2
2
A
13 22Right-handed alpha
Helix 3
3
A
27 31Right-handed 310
Helix 4
4
A
33 47Right-handed alpha
Helix 5
5
A
57 70Right-handed alpha
Helix 6
6
A
82 87Right-handed alpha
Helix 7
7
A
90 96Right-handed alpha
Helix 8
8
A
111 119Right-handed alpha
Helix 9
9
A
147 162Right-handed alpha
Helix 10
10
A
171 180Right-handed alpha
Helix 11
11
A
182 189Right-handed alpha
Helix 12
12
A
212 227Right-handed alpha
Helix 13
13
A
233 247Right-handed alpha
Helix 14
14
A
250 269Right-handed alpha
Helix 15
15
A
273 277Right-handed 310
Helix 16
16
A
292 304Right-handed alpha
Helix 17
17
A
324 343Right-handed alpha
Helix 18
18
B
6 10Right-handed 310
Helix 19
20
B
27 31Right-handed 310
Helix 20
21
B
33 48Right-handed alpha
Helix 21
22
B
57 70Right-handed alpha
Helix 22
23
B
82 87Right-handed alpha
Helix 23
24
B
90 97Right-handed alpha
Helix 24
25
B
111 119Right-handed alpha
Helix 25
26
B
147 162Right-handed alpha
Helix 26
27
B
171 180Right-handed alpha
Helix 27
28
B
182 189Right-handed alpha
Helix 28
29
B
212 227Right-handed alpha
Helix 29
30
B
233 247Right-handed alpha
Helix 30
31
B
250 269Right-handed alpha
Helix 31
32
B
273 277Right-handed 310
Helix 32
33
B
292 303Right-handed alpha
Helix 33
34
B
324 343Right-handed alpha
Helix 34
35
C
6 10Right-handed 310
Helix 35
37
C
27 31Right-handed 310
Helix 36
38
C
33 48Right-handed alpha
Helix 37
39
C
57 70Right-handed alpha
Helix 38
40
C
82 87Right-handed alpha
Helix 39
41
C
90 97Right-handed alpha
Helix 40
42
C
111 119Right-handed alpha
Helix 41
43
C
147 162Right-handed alpha
Helix 42
44
C
171 180Right-handed alpha
Helix 43
45
C
182 188Right-handed alpha
Helix 44
46
C
212 227Right-handed alpha
Helix 45
47
C
233 247Right-handed alpha
Helix 46
48
C
250 269Right-handed alpha
Helix 47
49
C
273 277Right-handed 310
Helix 48
50
C
292 303Right-handed alpha
Helix 49
51
C
324 343Right-handed alpha
Helix 50
52
D
6 10Right-handed 310
Helix 51
54
D
27 31Right-handed 310
Helix 52
55
D
33 47Right-handed alpha
Helix 53
56
D
57 70Right-handed alpha
Helix 54
57
D
82 87Right-handed alpha
Helix 55
58
D
90 97Right-handed alpha
Helix 56
59
D
111 119Right-handed alpha
Helix 57
60
D
147 162Right-handed alpha
Helix 58
61
D
171 180Right-handed alpha
Helix 59
62
D
182 188Right-handed alpha
Helix 60
63
D
212 227Right-handed alpha
Helix 61
64
D
233 247Right-handed alpha
Helix 62
65
D
250 269Right-handed alpha
Helix 63
66
D
273 277Right-handed 310
Helix 64
68
D
324 343Right-handed alpha
Back to top of page

There are 15 sheets in PDB entry 1M6S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
305 306parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
207 211anti-parallel
Strand 3
A
192 196anti-parallel
Strand 4
A
164 169parallel
Strand 5
A
129 135parallel
Strand 6
A
75 79parallel
Strand 7
A
99 103parallel
Back to list of sheets
Back to top of page

There are 1 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 318first strand
Strand 2
A
308 311anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
305 306parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
207 211anti-parallel
Strand 3
B
192 196anti-parallel
Strand 4
B
164 169parallel
Strand 5
B
129 135parallel
Strand 6
B
75 79parallel
Strand 7
B
99 103parallel
Back to list of sheets
Back to top of page

There are 1 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 110first strand
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 285first strand
Strand 2
B
314 318anti-parallel
Strand 3
B
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
305 306parallel
Back to list of sheets
Back to top of page

There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 55first strand
Strand 2
C
207 211anti-parallel
Strand 3
C
192 196anti-parallel
Strand 4
C
164 169parallel
Strand 5
C
129 135parallel
Strand 6
C
75 79parallel
Strand 7
C
99 103parallel
Back to list of sheets
Back to top of page

There are 1 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 110first strand
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
281 285first strand
Strand 2
C
314 318anti-parallel
Strand 3
C
308 309anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
305 306parallel
Back to list of sheets
Back to top of page

There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 55first strand
Strand 2
D
207 211anti-parallel
Strand 3
D
192 196anti-parallel
Strand 4
D
164 169parallel
Strand 5
D
129 135parallel
Strand 6
D
75 79parallel
Strand 7
D
99 103parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
314 318first strand
Strand 2
D
308 309anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il