Analysis of interatomic Contacts of Structural Units in PDB entry:
1M6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M6U entry

There are 2 chains in PDB entry 1M6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 63SER 327
B
 VAL 65ILE 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 1M6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
126 133Right-handed alpha
Helix 2
2
A
197 207Right-handed alpha
Helix 3
3
A
209 213Right-handed 310
Helix 4
4
A
216 220Right-handed alpha
Helix 5
5
A
225 227Right-handed 310
Helix 6
6
A
228 232Right-handed 310
Helix 7
7
A
236 241Right-handed 310
Helix 8
8
A
284 288Right-handed 310
Helix 9
9
B
126 133Right-handed alpha
Helix 10
10
B
197 205Right-handed alpha
Helix 11
11
B
209 213Right-handed 310
Helix 12
12
B
216 220Right-handed alpha
Helix 13
13
B
225 227Right-handed 310
Helix 14
14
B
228 232Right-handed 310
Helix 15
15
B
236 241Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1M6U. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 17 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 97first strand
Strand 2
A
114 121anti-parallel
Strand 3
A
250 258anti-parallel
Strand 4
A
167 172anti-parallel
Strand 5
A
152 161anti-parallel
Strand 6
A
188 189anti-parallel
Strand 7
A
152 161anti-parallel
Strand 8
A
272 283anti-parallel
Strand 9
A
307 317anti-parallel
Strand 10
A
297 301anti-parallel
Strand 11
A
307 317anti-parallel
Strand 12
A
70 74anti-parallel
Strand 13
A
307 317anti-parallel
Strand 14
A
272 283anti-parallel
Strand 15
A
321 324anti-parallel
Strand 16
A
105 109parallel
Strand 17
A
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 140first strand
Strand 2
A
145 149anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
245 247anti-parallel
Back to list of sheets
Back to top of page

There are 15 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
135 140anti-parallel
Strand 3
B
145 161anti-parallel
Strand 4
B
188 189anti-parallel
Strand 5
B
145 161anti-parallel
Strand 6
B
272 283anti-parallel
Strand 7
B
308 317anti-parallel
Strand 8
B
297 300anti-parallel
Strand 9
B
308 317anti-parallel
Strand 10
B
70 74anti-parallel
Strand 11
B
308 317anti-parallel
Strand 12
B
272 283anti-parallel
Strand 13
B
321 322anti-parallel
Strand 14
B
106 107parallel
Strand 15
B
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 97first strand
Strand 2
B
114 121anti-parallel
Strand 3
B
250 257anti-parallel
Strand 4
B
170 172anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
245 247anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il