Analysis of interatomic Contacts of Structural Units in PDB entry:
1M72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M72 entry

There are 6 chains in PDB entry 1M72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 40LYS 295
D
 ASP 501ASP 504
B
 VAL 41LYS 296
E
 ASP 501ASP 504
C
 ARG 40LEU 300
F
 ASP 501ASP 504
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1M72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 96Right-handed alpha
Helix 2
2
A
107 120Right-handed alpha
Helix 3
3
A
152 157Right-handed alpha
Helix 4
4
A
163 167Right-handed 310
Helix 5
5
A
231 244Right-handed alpha
Helix 6
6
A
248 264Right-handed alpha
Helix 7
7
A
271 275Right-handed 310
Helix 8
8
B
81 96Right-handed alpha
Helix 9
9
B
107 121Right-handed alpha
Helix 10
10
B
152 157Right-handed alpha
Helix 11
11
B
163 167Right-handed 310
Helix 12
12
B
231 244Right-handed alpha
Helix 13
13
B
248 264Right-handed alpha
Helix 14
14
B
271 275Right-handed 310
Helix 15
15
C
81 96Right-handed alpha
Helix 16
16
C
107 121Right-handed alpha
Helix 17
17
C
151 157Right-handed alpha
Helix 18
18
C
163 167Right-handed 310
Helix 19
19
C
231 244Right-handed alpha
Helix 20
20
C
248 264Right-handed alpha
Helix 21
21
C
271 275Right-handed 310
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There are 10 sheets in PDB entry 1M72. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
A
202 204anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
59 67parallel
Strand 3
A
126 134parallel
Strand 4
A
171 176parallel
Strand 5
A
210 214parallel
Strand 6
A
282 285anti-parallel
Strand 7
B
282 285anti-parallel
Strand 8
B
210 214anti-parallel
Strand 9
B
171 176parallel
Strand 10
B
126 134parallel
Strand 11
B
59 67parallel
Strand 12
B
98 104parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
141 143anti-parallel
Strand 3
A
148 149anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
A
187 190parallel
Strand 3
B
201 204anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
223 225anti-parallel
Strand 3
D
502 503anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
141 143anti-parallel
Strand 3
B
148 149anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
223 225anti-parallel
Strand 3
E
502 503anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 104first strand
Strand 2
C
62 67parallel
Strand 3
C
129 134parallel
Strand 4
C
171 176parallel
Strand 5
C
210 214parallel
Strand 6
C
282 285anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 138first strand
Strand 2
C
141 143anti-parallel
Strand 3
C
148 149anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 230first strand
Strand 2
C
223 225anti-parallel
Strand 3
F
502 503anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il