Analysis of interatomic Contacts of Structural Units in PDB entry:
1M79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M79 entry

There are 2 chains in PDB entry 1M79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 192
B
 MET 1LYS 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1M79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
56 61Right-handed alpha
Helix 3
3
A
62 62Right-handed 310
Helix 4
4
A
63 67Right-handed 310
Helix 5
5
A
95 102Right-handed alpha
Helix 6
6
A
114 122Right-handed alpha
Helix 7
7
A
139 143Right-handed 310
Helix 8
8
A
152 154Right-handed 310
Helix 9
9
A
160 169Right-handed alpha
Helix 10
10
B
29 42Right-handed alpha
Helix 11
11
B
56 61Right-handed alpha
Helix 12
12
B
63 67Right-handed 310
Helix 13
13
B
95 100Right-handed alpha
Helix 14
14
B
114 122Right-handed alpha
Helix 15
15
B
139 143Right-handed 310
Helix 16
16
B
152 154Right-handed 310
Helix 17
17
B
160 169Right-handed alpha
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There are 6 sheets in PDB entry 1M79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
73 77parallel
Strand 4
A
49 55parallel
Strand 5
A
106 113parallel
Strand 6
A
6 13parallel
Strand 7
A
127 136parallel
Strand 8
A
182 191anti-parallel
Strand 9
A
156 158anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
73 77parallel
Strand 4
A
49 55parallel
Strand 5
A
106 113parallel
Strand 6
A
6 13parallel
Strand 7
A
127 136parallel
Strand 8
A
182 191anti-parallel
Strand 9
A
177 179anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
147 148anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
90 93anti-parallel
Strand 3
B
73 77parallel
Strand 4
B
51 55parallel
Strand 5
B
109 113parallel
Strand 6
B
6 13parallel
Strand 7
B
127 136parallel
Strand 8
B
182 191anti-parallel
Strand 9
B
156 158anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
90 93anti-parallel
Strand 3
B
73 77parallel
Strand 4
B
51 55parallel
Strand 5
B
109 113parallel
Strand 6
B
6 13parallel
Strand 7
B
127 136parallel
Strand 8
B
182 191anti-parallel
Strand 9
B
177 179anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
147 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il