Analysis of interatomic Contacts of Structural Units in PDB entry:
1M7C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M7C entry

There are 6 chains in PDB entry 1M7C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1GLY 68
B
 ASP 69GLY 136
C
 ASP 137GLY 204
D
 ASP 205GLY 272
E
 ASP 273GLY 340
F
 ASP 341GLY 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1M7C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 9Right-handed alpha
Helix 2
2
A
50 52Right-handed 310
Helix 3
3
A
62 68Right-handed alpha
Helix 4
4
B
69 76Right-handed alpha
Helix 5
5
B
130 136Right-handed alpha
Helix 6
6
C
137 144Right-handed alpha
Helix 7
7
C
186 188Right-handed 310
Helix 8
8
C
198 204Right-handed alpha
Helix 9
9
D
205 212Right-handed alpha
Helix 10
10
D
266 272Right-handed alpha
Helix 11
11
E
273 280Right-handed alpha
Helix 12
12
E
322 324Right-handed 310
Helix 13
13
E
334 340Right-handed alpha
Helix 14
14
F
341 348Right-handed alpha
Helix 15
15
F
402 408Right-handed alpha
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There are 7 sheets in PDB entry 1M7C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
23 25anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
44 48anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
B
112 116anti-parallel
Strand 3
B
104 108anti-parallel
Strand 4
B
91 99anti-parallel
Strand 5
B
80 86anti-parallel
Strand 6
B
120 121anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 153first strand
Strand 2
C
159 167anti-parallel
Strand 3
C
172 176anti-parallel
Strand 4
C
180 184anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 193first strand
Strand 2
D
248 252anti-parallel
Strand 3
D
240 244anti-parallel
Strand 4
D
227 235anti-parallel
Strand 5
D
217 222anti-parallel
Strand 6
D
256 257anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
285 289first strand
Strand 2
E
295 303anti-parallel
Strand 3
E
308 312anti-parallel
Strand 4
E
316 320anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
328 329first strand
Strand 2
F
384 388anti-parallel
Strand 3
F
376 380anti-parallel
Strand 4
F
363 371anti-parallel
Strand 5
F
353 358anti-parallel
Strand 6
F
392 393anti-parallel
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