Analysis of interatomic Contacts of Structural Units in PDB entry:
1M7I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M7I entry

There are 2 chains in PDB entry 1M7I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ARG 211
B
 GLU 1PRO 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1M7I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
79 83Right-handed 310
Helix 2
2
A
124 127Right-handed 310
Helix 3
3
A
183 188Right-handed alpha
Helix 4
4
B
28 32Right-handed 310
Helix 5
5
B
61 64Right-handed 310
Helix 6
6
B
83 87Right-handed 310
Helix 7
7
B
156 158Right-handed 310
Helix 8
8
B
200 203Right-handed 310
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There are 8 sheets in PDB entry 1M7I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 67anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
33 38anti-parallel
Strand 4
A
84 90anti-parallel
Strand 5
A
97 98anti-parallel
Strand 6
A
84 90anti-parallel
Strand 7
A
102 107anti-parallel
Strand 8
A
10 14parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 118first strand
Strand 2
A
129 139anti-parallel
Strand 3
A
173 182anti-parallel
Strand 4
A
159 163anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
A
191 197anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
A
153 155anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
44 51anti-parallel
Strand 3
B
33 40anti-parallel
Strand 4
B
88 95anti-parallel
Strand 5
B
100 103anti-parallel
Strand 6
B
88 95anti-parallel
Strand 7
B
107 111anti-parallel
Strand 8
B
11 12parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 171first strand
Strand 2
B
174 183anti-parallel
Strand 3
B
164 165anti-parallel
Strand 4
B
174 183anti-parallel
Strand 5
B
136 145anti-parallel
Strand 6
B
120 124anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 154first strand
Strand 2
B
195 199anti-parallel
Strand 3
B
204 208anti-parallel
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