Analysis of interatomic Contacts of Structural Units in PDB entry:
1M7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M7R entry

There are 2 chains in PDB entry 1M7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 74ARG 586
B
 GLU 74ARG 586
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 1M7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
170 183Right-handed alpha
Helix 2
2
A
185 189Right-handed 310
Helix 3
3
A
192 196Right-handed 310
Helix 4
4
A
204 208Right-handed 310
Helix 5
5
A
210 218Right-handed alpha
Helix 6
6
A
251 262Right-handed alpha
Helix 7
7
A
263 266Right-handed 310
Helix 8
8
A
296 310Right-handed alpha
Helix 9
9
A
323 333Right-handed alpha
Helix 10
10
A
355 371Right-handed alpha
Helix 11
11
A
375 377Right-handed 310
Helix 12
12
A
378 387Right-handed alpha
Helix 13
13
A
387 408Right-handed alpha
Helix 14
14
A
422 436Right-handed alpha
Helix 15
15
A
437 440Right-handed 310
Helix 16
16
A
441 453Right-handed alpha
Helix 17
17
A
459 465Right-handed alpha
Helix 18
18
A
478 494Right-handed alpha
Helix 19
19
A
501 515Right-handed alpha
Helix 20
20
A
524 531Right-handed alpha
Helix 21
21
A
532 537Right-handed alpha
Helix 22
22
A
539 545Right-handed alpha
Helix 23
23
A
546 551Right-handed 310
Helix 24
24
A
576 581Right-handed alpha
Helix 25
25
B
174 184Right-handed alpha
Helix 26
26
B
184 189Right-handed alpha
Helix 27
27
B
192 196Right-handed 310
Helix 28
28
B
204 209Right-handed alpha
Helix 29
29
B
210 218Right-handed alpha
Helix 30
30
B
251 260Right-handed alpha
Helix 31
31
B
262 266Right-handed 310
Helix 32
32
B
296 310Right-handed alpha
Helix 33
33
B
323 332Right-handed alpha
Helix 34
34
B
340 344Right-handed 310
Helix 35
35
B
355 371Right-handed alpha
Helix 36
36
B
375 377Right-handed 310
Helix 37
37
B
378 387Right-handed alpha
Helix 38
38
B
387 408Right-handed alpha
Helix 39
39
B
422 436Right-handed alpha
Helix 40
40
B
437 440Right-handed 310
Helix 41
41
B
441 453Right-handed alpha
Helix 42
42
B
459 465Right-handed alpha
Helix 43
43
B
478 494Right-handed alpha
Helix 44
44
B
501 514Right-handed alpha
Helix 45
45
B
524 531Right-handed alpha
Helix 46
46
B
532 537Right-handed alpha
Helix 47
47
B
539 545Right-handed alpha
Helix 48
48
B
576 581Right-handed alpha
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There are 6 sheets in PDB entry 1M7R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
99 108anti-parallel
Strand 4
A
84 95anti-parallel
Strand 5
A
160 164anti-parallel
Strand 6
A
150 155anti-parallel
Strand 7
A
132 138anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
244 247anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
280 283anti-parallel
Strand 3
A
413 416parallel
Strand 4
A
316 320parallel
Strand 5
A
346 350parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 128first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
100 108anti-parallel
Strand 4
B
84 94anti-parallel
Strand 5
B
160 164anti-parallel
Strand 6
B
150 155anti-parallel
Strand 7
B
132 138anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
244 247anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
269 273first strand
Strand 2
B
280 285anti-parallel
Strand 3
B
413 417parallel
Strand 4
B
316 320parallel
Strand 5
B
346 350parallel
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