Analysis of interatomic Contacts of Structural Units in PDB entry:
1M7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M7S entry

There are 4 chains in PDB entry 1M7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 27ASP 510
B
 ASP 28ASP 510
C
 ASP 28ASP 510
D
 THR 27ASP 510
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 1M7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 68Right-handed alpha
Helix 2
2
A
100 104Right-handed 310
Helix 3
3
A
159 161Right-handed 310
Helix 4
4
A
162 171Right-handed alpha
Helix 5
5
A
180 190Right-handed alpha
Helix 6
6
A
191 193Right-handed 310
Helix 7
7
A
194 203Right-handed alpha
Helix 8
8
A
204 207Right-handed 310
Helix 9
9
A
210 214Right-handed 310
Helix 10
10
A
248 259Right-handed alpha
Helix 11
11
A
261 273Right-handed alpha
Helix 12
12
A
287 294Right-handed 310
Helix 13
13
A
324 329Right-handed alpha
Helix 14
14
A
348 366Right-handed alpha
Helix 15
15
A
369 377Right-handed 310
Helix 16
16
A
413 417Right-handed 310
Helix 17
17
A
438 448Right-handed alpha
Helix 18
18
A
449 465Right-handed alpha
Helix 19
19
A
468 483Right-handed alpha
Helix 20
20
A
483 494Right-handed alpha
Helix 21
21
A
497 507Right-handed alpha
Helix 22
22
B
57 68Right-handed alpha
Helix 23
23
B
100 104Right-handed 310
Helix 24
24
B
159 161Right-handed 310
Helix 25
25
B
162 171Right-handed alpha
Helix 26
26
B
181 189Right-handed alpha
Helix 27
27
B
190 193Right-handed 310
Helix 28
28
B
194 203Right-handed alpha
Helix 29
29
B
204 207Right-handed 310
Helix 30
30
B
210 214Right-handed 310
Helix 31
31
B
248 259Right-handed alpha
Helix 32
32
B
261 274Right-handed alpha
Helix 33
33
B
287 293Right-handed 310
Helix 34
34
B
348 366Right-handed alpha
Helix 35
35
B
369 377Right-handed 310
Helix 36
36
B
413 417Right-handed 310
Helix 37
37
B
438 447Right-handed alpha
Helix 38
38
B
449 465Right-handed alpha
Helix 39
39
B
468 483Right-handed alpha
Helix 40
40
B
483 494Right-handed alpha
Helix 41
41
B
497 507Right-handed alpha
Helix 42
42
C
57 68Right-handed alpha
Helix 43
43
C
100 104Right-handed 310
Helix 44
44
C
159 161Right-handed 310
Helix 45
45
C
162 171Right-handed alpha
Helix 46
46
C
180 189Right-handed alpha
Helix 47
47
C
190 193Right-handed 310
Helix 48
48
C
194 203Right-handed alpha
Helix 49
49
C
204 207Right-handed 310
Helix 50
50
C
210 214Right-handed 310
Helix 51
51
C
248 259Right-handed alpha
Helix 52
52
C
261 274Right-handed alpha
Helix 53
53
C
287 294Right-handed 310
Helix 54
54
C
348 366Right-handed alpha
Helix 55
55
C
369 377Right-handed 310
Helix 56
56
C
413 417Right-handed 310
Helix 57
57
C
438 447Right-handed alpha
Helix 58
58
C
449 465Right-handed alpha
Helix 59
59
C
468 483Right-handed alpha
Helix 60
60
C
483 495Right-handed alpha
Helix 61
61
C
497 507Right-handed alpha
Helix 62
62
D
57 68Right-handed alpha
Helix 63
63
D
100 104Right-handed 310
Helix 64
64
D
159 161Right-handed 310
Helix 65
65
D
162 171Right-handed alpha
Helix 66
66
D
181 189Right-handed alpha
Helix 67
67
D
190 193Right-handed 310
Helix 68
68
D
194 203Right-handed alpha
Helix 69
69
D
204 207Right-handed 310
Helix 70
70
D
210 214Right-handed 310
Helix 71
71
D
248 259Right-handed alpha
Helix 72
72
D
261 273Right-handed alpha
Helix 73
73
D
287 294Right-handed 310
Helix 74
74
D
348 366Right-handed alpha
Helix 75
75
D
369 377Right-handed 310
Helix 76
76
D
413 417Right-handed 310
Helix 77
77
D
438 448Right-handed alpha
Helix 78
78
D
449 465Right-handed alpha
Helix 79
79
D
468 483Right-handed alpha
Helix 80
80
D
483 495Right-handed alpha
Helix 81
81
D
497 508Right-handed alpha
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There are 9 sheets in PDB entry 1M7S. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
D
427 428anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
D
46 47anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
C
427 428anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 428first strand
Strand 2
C
46 47anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 345first strand
Strand 2
C
222 225anti-parallel
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There are 11 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 345first strand
Strand 2
A
222 225anti-parallel
Strand 3
A
231 240anti-parallel
Strand 4
A
216 217anti-parallel
Strand 5
A
143 150anti-parallel
Strand 6
A
133 140anti-parallel
Strand 7
A
108 116anti-parallel
Strand 8
A
81 90anti-parallel
Strand 9
A
310 321anti-parallel
Strand 10
A
278 286anti-parallel
Strand 11
A
231 240anti-parallel
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There are 11 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 345first strand
Strand 2
B
222 225anti-parallel
Strand 3
B
231 240anti-parallel
Strand 4
B
216 217anti-parallel
Strand 5
B
143 150anti-parallel
Strand 6
B
133 140anti-parallel
Strand 7
B
108 116anti-parallel
Strand 8
B
81 90anti-parallel
Strand 9
B
310 321anti-parallel
Strand 10
B
278 286anti-parallel
Strand 11
B
231 240anti-parallel
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There are 11 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 345first strand
Strand 2
C
222 225anti-parallel
Strand 3
C
231 240anti-parallel
Strand 4
C
216 217anti-parallel
Strand 5
C
143 150anti-parallel
Strand 6
C
133 140anti-parallel
Strand 7
C
108 116anti-parallel
Strand 8
C
81 90anti-parallel
Strand 9
C
310 321anti-parallel
Strand 10
C
278 286anti-parallel
Strand 11
C
231 240anti-parallel
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There are 11 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
343 345first strand
Strand 2
D
222 225anti-parallel
Strand 3
D
231 240anti-parallel
Strand 4
D
216 217anti-parallel
Strand 5
D
143 150anti-parallel
Strand 6
D
133 140anti-parallel
Strand 7
D
108 116anti-parallel
Strand 8
D
81 90anti-parallel
Strand 9
D
310 321anti-parallel
Strand 10
D
278 286anti-parallel
Strand 11
D
231 240anti-parallel
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