Analysis of interatomic Contacts of Structural Units in PDB entry:
1M83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M83 entry

There is 1 chain in PDB entry 1M83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1M83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 22Right-handed alpha
Helix 2
2
A
22 30Right-handed alpha
Helix 3
3
A
40 45Right-handed alpha
Helix 4
4
A
50 68Right-handed alpha
Helix 5
5
A
81 83Right-handed 310
Helix 6
6
A
84 95Right-handed alpha
Helix 7
7
A
98 104Right-handed alpha
Helix 8
8
A
105 112Right-handed alpha
Helix 9
9
A
119 124Right-handed alpha
Helix 10
10
A
124 135Right-handed alpha
Helix 11
11
A
144 146Right-handed 310
Helix 12
12
A
147 166Right-handed alpha
Helix 13
13
A
199 203Right-handed 310
Helix 14
14
A
209 219Right-handed alpha
Helix 15
15
A
235 250Right-handed alpha
Helix 16
16
A
252 260Right-handed alpha
Helix 17
17
A
264 292Right-handed alpha
Helix 18
18
A
294 323Right-handed alpha
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There are 2 sheets in PDB entry 1M83. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
34 39parallel
Strand 3
A
75 79parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
173 175parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il