Analysis of interatomic Contacts of Structural Units in PDB entry:
1M8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M8J entry

There is 1 chain in PDB entry 1M8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4ALA 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1M8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
51 66Right-handed alpha
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
A
83 85Right-handed 310
Helix 5
5
A
86 95Right-handed alpha
Helix 6
6
A
105 115Right-handed alpha
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
150 160Right-handed alpha
Helix 10
10
A
161 170Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1M8J.

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
32 37parallel
Strand 3
A
5 10parallel
Strand 4
A
100 102parallel
Strand 5
A
118 120parallel
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