Analysis of interatomic Contacts of Structural Units in PDB entry:
1M8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M8K entry

There are 3 chains in PDB entry 1M8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 171
B
 THR 3LYS 171
C
 THR 3LYS 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1M8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
51 66Right-handed alpha
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
A
83 95Right-handed alpha
Helix 5
5
A
105 114Right-handed alpha
Helix 6
6
A
127 130Right-handed 310
Helix 7
7
A
131 141Right-handed alpha
Helix 8
8
A
145 149Right-handed 310
Helix 9
9
A
150 160Right-handed alpha
Helix 10
10
A
161 169Right-handed alpha
Helix 11
11
B
16 28Right-handed alpha
Helix 12
12
B
52 66Right-handed alpha
Helix 13
13
B
83 85Right-handed 310
Helix 14
14
B
86 94Right-handed alpha
Helix 15
15
B
105 115Right-handed alpha
Helix 16
16
B
131 141Right-handed alpha
Helix 17
17
B
145 149Right-handed 310
Helix 18
18
B
150 160Right-handed alpha
Helix 19
19
B
161 171Right-handed alpha
Helix 20
20
C
16 27Right-handed alpha
Helix 21
21
C
51 66Right-handed alpha
Helix 22
22
C
69 71Right-handed 310
Helix 23
23
C
83 94Right-handed alpha
Helix 24
24
C
105 115Right-handed alpha
Helix 25
25
C
127 130Right-handed 310
Helix 26
26
C
131 142Right-handed alpha
Helix 27
27
C
145 149Right-handed 310
Helix 28
28
C
150 160Right-handed alpha
Helix 29
29
C
161 171Right-handed alpha
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There are 3 sheets in PDB entry 1M8K. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
32 38parallel
Strand 3
A
5 10parallel
Strand 4
A
100 102parallel
Strand 5
A
118 120parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
32 37parallel
Strand 3
B
5 10parallel
Strand 4
B
100 102parallel
Strand 5
B
118 120parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 77first strand
Strand 2
C
32 37parallel
Strand 3
C
5 10parallel
Strand 4
C
100 102parallel
Strand 5
C
118 120parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il