Analysis of interatomic Contacts of Structural Units in PDB entry:
1M8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M8N entry

There are 4 chains in PDB entry 1M8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2MET 121
B
 THR 3MET 121
C
 THR 3MET 121
D
 GLY 2MET 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1M8N

There are 5 sheets in PDB entry 1M8N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
21 23parallel
Strand 3
A
37 39parallel
Strand 4
A
52 54parallel
Strand 5
A
67 69parallel
Strand 6
A
82 84parallel
Strand 7
A
99 101parallel
Strand 8
A
104 105anti-parallel
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There are 15 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
26 28parallel
Strand 3
A
42 44parallel
Strand 4
A
57 59parallel
Strand 5
A
72 79parallel
Strand 6
A
86 96parallel
Strand 7
A
112 114anti-parallel
Strand 8
A
86 96anti-parallel
Strand 9
A
117 120anti-parallel
Strand 10
A
86 96anti-parallel
Strand 11
A
72 79parallel
Strand 12
A
62 64parallel
Strand 13
A
47 49parallel
Strand 14
A
31 33parallel
Strand 15
A
16 17parallel
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There are 23 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
26 28parallel
Strand 3
B
42 44parallel
Strand 4
B
57 59parallel
Strand 5
B
72 79parallel
Strand 6
B
86 96parallel
Strand 7
B
112 114anti-parallel
Strand 8
B
86 96anti-parallel
Strand 9
B
117 120anti-parallel
Strand 10
B
86 96anti-parallel
Strand 11
B
72 79parallel
Strand 12
B
62 64parallel
Strand 13
B
47 49parallel
Strand 14
B
31 39parallel
Strand 15
B
16 23parallel
Strand 16
B
4 7parallel
Strand 17
B
16 23parallel
Strand 18
B
31 39parallel
Strand 19
B
52 54parallel
Strand 20
B
67 69parallel
Strand 21
B
82 84parallel
Strand 22
B
99 101parallel
Strand 23
B
104 105anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
20 23parallel
Strand 3
C
37 39parallel
Strand 4
C
52 54parallel
Strand 5
C
67 69parallel
Strand 6
C
82 84parallel
Strand 7
C
99 101parallel
Strand 8
C
104 105anti-parallel
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There are 15 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 11first strand
Strand 2
C
26 28parallel
Strand 3
C
42 44parallel
Strand 4
C
57 59parallel
Strand 5
C
72 79parallel
Strand 6
C
86 96parallel
Strand 7
C
112 114anti-parallel
Strand 8
C
86 96anti-parallel
Strand 9
C
117 120anti-parallel
Strand 10
C
86 96anti-parallel
Strand 11
C
72 79parallel
Strand 12
C
62 64parallel
Strand 13
C
47 49parallel
Strand 14
C
31 33parallel
Strand 15
C
16 18parallel
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