Analysis of interatomic Contacts of Structural Units in PDB entry:
1M8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M8P entry

There are 3 chains in PDB entry 1M8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 573
B
 MET 1GLN 573
C
 MET 1GLN 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 1M8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 17Right-handed alpha
Helix 2
2
A
20 29Right-handed alpha
Helix 3
3
A
37 49Right-handed alpha
Helix 4
4
A
60 71Right-handed alpha
Helix 5
5
A
88 95Right-handed alpha
Helix 6
6
A
126 134Right-handed alpha
Helix 7
7
A
141 150Right-handed alpha
Helix 8
8
A
171 175Right-handed 310
Helix 9
9
A
177 188Right-handed alpha
Helix 10
10
A
203 217Right-handed alpha
Helix 11
11
A
234 248Right-handed alpha
Helix 12
12
A
249 251Right-handed 310
Helix 13
13
A
268 284Right-handed alpha
Helix 14
14
A
310 324Right-handed alpha
Helix 15
15
A
358 369Right-handed alpha
Helix 16
16
A
378 387Right-handed alpha
Helix 17
17
A
408 424Right-handed alpha
Helix 18
18
A
433 440Right-handed alpha
Helix 19
19
A
447 468Right-handed alpha
Helix 20
20
A
480 493Right-handed alpha
Helix 21
21
A
505 513Right-handed alpha
Helix 22
22
A
516 523Right-handed alpha
Helix 23
23
A
552 567Right-handed alpha
Helix 24
24
B
12 18Right-handed alpha
Helix 25
25
B
20 31Right-handed alpha
Helix 26
26
B
37 49Right-handed alpha
Helix 27
27
B
60 71Right-handed alpha
Helix 28
28
B
88 95Right-handed alpha
Helix 29
29
B
126 136Right-handed alpha
Helix 30
30
B
141 148Right-handed alpha
Helix 31
31
B
171 175Right-handed 310
Helix 32
32
B
177 188Right-handed alpha
Helix 33
33
B
203 217Right-handed alpha
Helix 34
34
B
234 248Right-handed alpha
Helix 35
35
B
249 251Right-handed 310
Helix 36
36
B
268 283Right-handed alpha
Helix 37
37
B
310 324Right-handed alpha
Helix 38
38
B
358 369Right-handed alpha
Helix 39
39
B
378 387Right-handed alpha
Helix 40
40
B
408 424Right-handed alpha
Helix 41
41
B
433 440Right-handed alpha
Helix 42
42
B
447 468Right-handed alpha
Helix 43
43
B
480 493Right-handed alpha
Helix 44
44
B
505 513Right-handed alpha
Helix 45
45
B
516 523Right-handed alpha
Helix 46
46
B
552 567Right-handed alpha
Helix 47
47
C
12 18Right-handed alpha
Helix 48
48
C
20 31Right-handed alpha
Helix 49
49
C
37 49Right-handed alpha
Helix 50
50
C
60 71Right-handed alpha
Helix 51
51
C
88 95Right-handed alpha
Helix 52
52
C
126 134Right-handed alpha
Helix 53
53
C
141 150Right-handed alpha
Helix 54
54
C
171 175Right-handed 310
Helix 55
55
C
177 188Right-handed alpha
Helix 56
56
C
203 217Right-handed alpha
Helix 57
57
C
234 248Right-handed alpha
Helix 58
58
C
249 251Right-handed 310
Helix 59
59
C
268 283Right-handed alpha
Helix 60
60
C
310 324Right-handed alpha
Helix 61
61
C
358 369Right-handed alpha
Helix 62
62
C
378 387Right-handed alpha
Helix 63
63
C
408 424Right-handed alpha
Helix 64
64
C
433 440Right-handed alpha
Helix 65
65
C
447 468Right-handed alpha
Helix 66
66
C
480 493Right-handed alpha
Helix 67
67
C
505 513Right-handed alpha
Helix 68
68
C
516 523Right-handed alpha
Helix 69
69
C
552 566Right-handed alpha
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There are 14 sheets in PDB entry 1M8P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
102 107parallel
Strand 3
A
113 119anti-parallel
Strand 4
A
158 162anti-parallel
Strand 5
A
57 58anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
154 155anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
220 223parallel
Strand 3
A
193 196parallel
Strand 4
A
287 290parallel
Strand 5
A
326 329parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 432first strand
Strand 2
A
471 475parallel
Strand 3
A
397 402parallel
Strand 4
A
496 502parallel
Strand 5
A
544 546parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
102 107parallel
Strand 3
B
113 123anti-parallel
Strand 4
B
154 162anti-parallel
Strand 5
B
57 58anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
102 107parallel
Strand 3
B
113 123anti-parallel
Strand 4
B
154 162anti-parallel
Strand 5
B
86 87anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
287 290parallel
Strand 3
B
193 198parallel
Strand 4
B
220 227parallel
Strand 5
B
256 258parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
287 290parallel
Strand 3
B
193 198parallel
Strand 4
B
220 227parallel
Strand 5
B
261 262parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
428 432first strand
Strand 2
B
471 475parallel
Strand 3
B
397 402parallel
Strand 4
B
496 502parallel
Strand 5
B
544 546parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
102 106parallel
Strand 3
C
113 123anti-parallel
Strand 4
C
154 162anti-parallel
Strand 5
C
57 58anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
102 106parallel
Strand 3
C
113 123anti-parallel
Strand 4
C
154 162anti-parallel
Strand 5
C
85 87anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 258first strand
Strand 2
C
220 223parallel
Strand 3
C
193 196parallel
Strand 4
C
287 290parallel
Strand 5
C
326 329parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
226 227first strand
Strand 2
C
261 262parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
428 432first strand
Strand 2
C
471 475parallel
Strand 3
C
397 402parallel
Strand 4
C
496 502parallel
Strand 5
C
544 546parallel
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