Analysis of interatomic Contacts of Structural Units in PDB entry:
1M8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1M8T entry

There are 6 chains in PDB entry 1M8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1CYS 124
B
 HIS 1CYS 124
C
 HIS 1CYS 124
D
 HIS 1CYS 124
E
 HIS 1CYS 124
F
 HIS 1CYS 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 1M8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 13Right-handed alpha
Helix 2
2
A
17 22Right-handed alpha
Helix 3
3
A
39 55Right-handed alpha
Helix 4
4
A
89 109Right-handed alpha
Helix 5
5
A
112 116Right-handed 310
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
B
1 13Right-handed alpha
Helix 8
8
B
17 22Right-handed alpha
Helix 9
9
B
39 56Right-handed alpha
Helix 10
10
B
89 109Right-handed alpha
Helix 11
11
B
112 116Right-handed 310
Helix 12
12
B
119 124Right-handed alpha
Helix 13
13
C
1 13Right-handed alpha
Helix 14
14
C
17 22Right-handed alpha
Helix 15
15
C
39 56Right-handed alpha
Helix 16
16
C
89 108Right-handed alpha
Helix 17
17
C
112 116Right-handed 310
Helix 18
18
C
119 124Right-handed alpha
Helix 19
19
D
1 13Right-handed alpha
Helix 20
20
D
17 22Right-handed alpha
Helix 21
21
D
39 56Right-handed alpha
Helix 22
22
D
89 109Right-handed alpha
Helix 23
23
D
112 116Right-handed 310
Helix 24
24
D
119 124Right-handed alpha
Helix 25
25
E
1 13Right-handed alpha
Helix 26
26
E
17 22Right-handed alpha
Helix 27
27
E
39 56Right-handed alpha
Helix 28
28
E
89 108Right-handed alpha
Helix 29
29
E
112 116Right-handed 310
Helix 30
30
E
119 124Right-handed alpha
Helix 31
31
F
1 13Right-handed alpha
Helix 32
32
F
17 22Right-handed alpha
Helix 33
33
F
39 56Right-handed alpha
Helix 34
34
F
89 107Right-handed alpha
Helix 35
35
F
112 116Right-handed 310
Helix 36
36
F
119 124Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1M8T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
A
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 25first strand
Strand 2
B
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 25first strand
Strand 2
C
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 78first strand
Strand 2
C
81 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 77first strand
Strand 2
D
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
24 25first strand
Strand 2
E
29 30anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
75 77first strand
Strand 2
E
82 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
75 78first strand
Strand 2
F
81 84anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il